1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttctcgtatttggtttaatttttcgatcctgaataagtacgttgcgacttatttactctggcaaggagaacttgggtaaagacaatgtgaatgactaccattgagttttgaagtggattttttgtggccagtagtagagtaatcagactgtctacacatcgtttatgcag
species | Physcomitrella patens |
transcript | PP1S46_310V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG TTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCACEST: gi|208370333|gb|DC931745.1|DC931745
genomic: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttc ... gtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCAC
EST: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG TTGCAA-GCCATTGGTGGCTGATGGTTCTGCCA-GTCACATGCCATGTCACEST: gi|100424319|gb|BY958425.1|BY958425
genomic: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttc ... gtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCAC
EST: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG TTGCAAAGCCATTGGTGGCTGATGGTTCTGCCEST: gi|162230406|gb|FC407074.1|FC407074
genomic: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttc ... gtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCC
EST: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG TTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCACEST: gi|67572564|gb|BJ945388.1|BJ945388
genomic: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttc ... gtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCAC
EST: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGG TTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCAC
genomic: GTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttc ... gtttatgcagTTGCAAAGCCATTGGTGGCTGATGGTTCTGCCAAGTCACATGCCATGTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAGTACGAGTTCCAAAGCAACTGGTGGTTGTCGGTGATTCGTCCTGCATTCCATCCTCCGTAGCTGAAGCAGGATTGAAGCTGCCTTTGGgtaattgttctcgtatttggtttaatttttcgatcctgaataagtacgttgcgacttatttactctggcaaggagaacttgggtaaagacaatgtgaatgactaccattgagttttgaagtggattttttgtggccagtagtagagtaatcagactgtctacacatcgtttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC