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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCGCTCAGTCTTTTCTCCAGTCTTTCAAGGGGAGTCCTTACTGGATGGCTCCTGAGgtacgtgtcaattgtattattactagtactgactgttaaatattactagcacagccttgtgggtcatatgtattcacctggtacgtcgtacatgtacttttggaggcattagaatctttccttcttattgacgccttaacatggttcttaactagcag

Basic information

species Physcomitrella patens
transcript PP1S44_113V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S44_113V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os04g35700.1 (Oryza sativa), 5'ss of exon 7
ATCTCCGCTCAGTCTTTTCTCCAGTCTTTCAAGGGGAGTCCTTACTGGATGGCTCCTGAGgtacgtgtcaattgtattattactagtactgactgttaaatattac---tagca-cagccttgtgggtcatatgtattcacctggtacgtcgtacatgtacttttggaggcattagaatctttccttcttattgacgccttaacatggttcttaactagcag
|| ||  ||    ||    | |  |||||||| || |||||||||||||||||||||||||||      |||||| ||  ||  ||||   ||  ||| |||       || || || | || |  |   | || |||| |||  |   |   ||||| |                                                              
ATATCATCTTTTGCTGAAATACGCTCTTTCAAAGGAAGTCCTTACTGGATGGCTCCTGAGgta------aattgtttttctaacagta--aacctttatataccgtatttatcatcatctttatatgat-tctgaattctcctaatgattgtaacatgcag-------------------------------------------------------------

upper sequence: PP1S44_113V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G140726_T01 (Zea mays), 5'ss of exon 7
ATCTCCGCTCAGTCTTTTCTCCAGTCTTTCAAGGGGAGTCCTTACTGGATGGCTCCTGAGgtacgtgtcaattgtattattactagtactgactgttaaatattactagcacagccttgtgggtcatatgtattcacctggtacgtcgtacatgtacttttggaggcattagaatctttccttcttattgacgccttaacatggttcttaactagcag
|| ||  ||    ||    | |  |||||||| || ||||||||||||||||||||||||||       |  | | ||| |||    |||  ||  | | ||||  |   |      |||| ||| | || ||  |  |    | || |      || ||  |                                                       
ATATCATCTTTTGCTGAAATACGTTCTTTCAAAGGAAGTCCTTACTGGATGGCTCCTGAGgtg------agctattttaataccga-acttcct--tgattatttgtcataatctgctgtgcgtc-tctgaatgaagttctcccatcattgggaaaccttcag-------------------------------------------------------

upper sequence: PP1S44_113V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 7
ATCTCCGCTCAGTCTTTTCTCCAGTCTTTCAAGGGGAGTCCTTACTGGATGGCTCCTGAGgtacgtgtcaattgtattattact-agtactgactgttaaatattactagcacagccttgtgggtcatatgtattcacctggtacgtcgtacatgtacttttggaggcattagaatctttccttcttattgacgccttaacatggttcttaactagcag
||   ||     |||| ||     |||||||| || ||||||||||||||||| ||||||||  |  | | || ||     | | |  |||   ||||  | ||          || ||||  ||  ||| |  | | ||     |||        | ||    ||                                                     
ATAAGCGGGTCCTCTTGTCCATTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagaatgatttctacatccattcaacactttttgttgcagat----------gctttgtctgtagtatattcttatctt---tgtcactgcctcaattacatag-----------------------------------------------------

upper sequence: PP1S44_113V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 10
ATCTCCGCTCAGTCTTTTCTCCAGTCTTTCAAGGGGAGTCCTTACTGGATGGCTCCTGAGgtacgtgtcaattgtattattactagtactgactgttaaatattactagcacagccttgtgggtcatatgtattcacctggtacgtcgtacatgtacttttggaggcattagaatctttccttcttattgacgccttaacatggttcttaactagcag
||    |  || || | ||     |||||||| || ||||||||||||||||| ||||||||  || | | || | || ||   |||  |   |  |  ||  |  |     |   ||||  ||   |    ||    ||    |                                                                         
ATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagtatgatttct-ttgttg--agttttttgtaattgatgcttttgatgtaatattgtttgtgtcactgttttgattgtctag-------------------------------------------------------------------------

upper sequence: PP1S44_113V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA01G42960.1 (Glycine max), 5'ss of exon 7
ATCTCCGCTCAGTCTTTTCTCCAGTCTTTCAAGGGGAGTCCTTACTGGATGGCTCCTGAGgtacgtgtcaattgtattattactagtactgact-gtta--aatattactagcacagccttgtgggtcatatgtattcacctggtacgtcgtacatgtacttttggaggcattagaatctttccttcttattgacgccttaacatggttcttaactagcag
||    |  || || | ||     |||||||| || ||||||||||||||||| ||||||||  || | | || | |  | ||| | | |   | ||||   ||  |  |   | |   ||||  ||   |    ||    ||    |                                                                         
ATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagtatgatttctttgttaacttgcatttttttgttattgatgcttttgatataatattgtttgtgtcactgctttgattgtctag-------------------------------------------------------------------------