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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATTCTGATGTGTGGGTCATGAATGTTGTTTCCTCGTACTCTGCCAACACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctccccccttctcccttccagtatttcattaattctcaatgcatcttttccagtaagaatatgaagcatcgcagggtaggggcgtctcgcacgaat...

Basic information

species Physcomitrella patens
transcript PP1S43_170V6.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37828329|gb|BJ586341.1|BJ586341
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37825949|gb|BJ584015.1|BJ584015
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37830025|gb|BJ588037.1|BJ588037
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|208385891|gb|DC956729.1|DC956729
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37829204|gb|BJ587216.1|BJ587216
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37821234|gb|BJ579300.1|BJ579300
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|18333273|gb|BJ165287.1|BJ165287
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37822057|gb|BJ580123.1|BJ580123
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37832577|gb|BJ590589.1|BJ590589
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37821986|gb|BJ580052.1|BJ580052
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37835634|gb|BJ593646.1|BJ593646
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37835747|gb|BJ593759.1|BJ593759
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|162188517|gb|FC365115.1|FC365115
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37835470|gb|BJ593482.1|BJ593482
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37829644|gb|BJ587656.1|BJ587656
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|162194361|gb|FC369740.1|FC369740
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|162156232|gb|FC332048.1|FC332048
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37846743|gb|BJ604751.1|BJ604751
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|162155711|gb|FC331324.1|FC331324
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|18336666|gb|BJ168689.1|BJ168689
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37827259|gb|BJ585271.1|BJ585271
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|162171557|gb|FC347498.1|FC347498
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37824338|gb|BJ582404.1|BJ582404
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|162226906|gb|FC403094.1|FC403094
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|162163482|gb|FC340016.1|FC340016
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
EST: gi|37821105|gb|BJ579171.1|BJ579171
EST:     ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTG                         GTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC
genomic: ACACTAGGCATCGTCTATGATCGGGGCTTGATTGGCGCAGTGCACGACTGgtatctcccc ... actgtgacagGTGTGAGGCATTCTCCACGTATCCAAGAACGTACGATTGGATCCACGTCGC