1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGCATCTGGAGAGCAATTGCAGGAATACAAAGGACATGAAAATAAAgtatggtgaactcaagccattcaatagagcaagcttgccatgtttcttatgttggatccaattttctgatatcaagtacttgttagctcatttctcagtgaggcagctatcacctaactaagtgagttgtcatggacacgaacag
species | Physcomitrella patens |
transcript | PP1S427_22V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCATCTGGAGAGCAATTGCAGGAATACAAAGGACATGAAAATAAA GCATNCA-GATGGATAGCTGCTTAACTA-TACAGACGCC-ATGTANTGAGCEST: gi|162167496|gb|FC344200.1|FC344200
genomic: GGCATCTGGAGAGCAATTGCAGGAATACAAAGGACATGAAAATAAAgtatggtgaa ... acacgaacagGCATTCAAGATGGATAGCTGCTTAACTAATACAGACGCCCATGTAGTGAGC
EST: GGCATCTGGAGAGCAATTGCAGGAATACAAAGGACATGAAAATAAA GCATTCAAGATGGATAGCTGCTTAACTAATACAGACGCCCATGTAGTGAGC
genomic: GGCATCTGGAGAGCAATTGCAGGAATACAAAGGACATGAAAATAAAgtatggtgaa ... acacgaacagGCATTCAAGATGGATAGCTGCTTAACTAATACAGACGCCCATGTAGTGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATCTGGAGAGCAATTGCAGGAATACAAAGGACATGAAAATAAAgtatggtgaactcaagccattcaatagagcaagcttgccatgtttcttatgttggatccaattttctgatatcaagtacttgttagctcatttctcagtgaggcagctatcacctaactaagtgagttgtcatggacacgaacag
- - - TGGAGA
- - - - AGAGCA