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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAGCTGAACTCTTATCAGCCATCGTGACGTTTTTCACTAAACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAGgtctcttcttttatgtgttttaatcctgagatttttcactcaacaaatggttcagaaactttcttagacctagattagaggttcagaatgagtttgagaa...

Basic information

species Physcomitrella patens
transcript PP1S407_7V6.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184196|gb|FC360463.1|FC360463
EST:     AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAG                         GTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
genomic: AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAGgtctcttctt ... taatatgcagGTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
EST: gi|208379607|gb|DC927104.1|DC927104
EST:     ACTCAACATTACCGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAG                         GTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
genomic: ACTCAACATTA-CGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAGgtctcttctt ... taatatgcagGTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
EST: gi|67726712|gb|BJ976971.1|BJ976971
EST:     CTGATGACGTTGGGATCAAAGTTTCAAACCGAAAG                         GTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
genomic: CTGATGACGTTGGGATCAAAGTTTCAAACCGAAAGgtctcttctt ... taatatgcagGTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
EST: gi|208354688|gb|DC934180.1|DC934180
EST:     AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAG                         GTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATNCCTTNGCA
genomic: AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAGgtctcttctt ... taatatgcagGTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
EST: gi|208346695|gb|DC913341.1|DC913341
EST:     AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAG                         GTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
genomic: AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAGgtctcttctt ... taatatgcagGTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
EST: gi|100362562|gb|BY947415.1|BY947415
EST:     AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCNAACCGAAAG                         GTCCTCCNAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA
genomic: AACTCAACATTACGTCTGATGACGTTGGGATCAAAGTTTCAAACCGAAAGgtctcttctt ... taatatgcagGTCCTCCAAGCAGTGCTTGAGAAGTATGACATCCAGCCTGATTCCTTTGCA