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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCTCCTAGTGCATGGTCACTGGAATTATCAGCGCTTGGGTTATATGGTGCTTTACAATTTCTACCGAAATGCAGTTTTTGTCCTGATGCTTTTCTGgttagtcaaggacatctcatcgtaccatcttcatttgcattactggaccccgtagtgagagttattttcatgatctacttttgttcaattgtatgcaagt...

Basic information

species Physcomitrella patens
transcript PP1S39_64V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_64V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA16G34610.1 (Glycine max), 5'ss of exon 5
GCTTTCTCCTAGTGCATGGTCACTGGAATTATCAGCGCTTGGGTTATATGGTGCTTTACAATTTCTACCGAAATGCAGTTTTTGTCCTGATGCTTTTCTGgttagtcaaggacatctcatcgtaccatc--ttcatttgca-ttactggaccccgtagtgagagttattttcatgatctacttttgttcaattgtatgcaagt
  || || ||||| ||||| ||||||||||| |||||  | |||||| |  | || ||||| |||||||||||||| || |||||  ||||||| |||||||  || |  |   |||  |  |||       | | || || ||  | |       | | ||  ||  ||   |  | || || || |   |  | |   |  
AATTACTTCTAGTTCATGGACACTGGAATTACCAGCGTGTTGGTTATTTAATTCTGTACAACTTCTACCGAAATGCTGTCTTTGTGTTGATGCTATTCTGgtatgt-atagttttcttttaatactgatggctgacttccacttgtttgtttgatcaattagtctttcttaacttttttaattctgctatctgatctttca--

upper sequence: PP1S39_64V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 5
GCTTTCTCCTAGTGCATGGTCACTGGAATTATCAGCGCTTGGGTTATATGGTGCTTTACAATTTCTACCGAAATGCAGTTTTTGTCCTGATGCTTTTCTGgttagtcaaggacatctcatcgtaccatcttcatttgcattactggaccccgtagtgagagttattttcatgatctacttttgttcaattgtatgcaagt--
| || || || |||||||| |||||||||||||||||  | |||||| |||| |||||||| |||||||| ||||| ||||||||  ||||||| |||||||   |  | ||  | | ||  |      || |    || | ||       ||  |    ||  ||   ||   ||   ||||     || ||||  |    
GATTGCTTCTGGTGCATGGACACTGGAATTATCAGCGTGTTGGTTATTTGGTTCTTTACAACTTCTACCGCAATGCTGTTTTTGTTTTGATGCTATTCTGgt--atttatgaatttttatttttttccgttaacccccagttctcttaattgtcttttatgtatttgatattggctgaatttgaagttttttatgtgaccta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34832448|gb|AJ566713.1|AJ566713
EST:     GTGCTTTACAATTTCTACCGAAATGCAGTTTTTGTCCTGATGCTTTTCTG                         GTTCATATTCTATACAGCATATTCTCCCCAATCCGCTCTTACTGATTGGAA
genomic: GTGCTTTACAATTTCTACCGAAATGCAGTTTTTGTCCTGATGCTTTTCTGgttagtcaag ... tcaactccagGTTCATATTCTATACAGCATATTCTCCCCAATCCGCTCTTACTGATTGGAA