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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTGATCGCACTACAATTGTGGTCGCTCATCGGCTTACAACAATCCGTAATGCGAATCTCATAGCTGTCATTCAACGTGGTGTGGTCGTAGAAACAGgtaagggatctgatatttcagtttgtacagcgtcaatcgtccgatgcccagaaactagtcacgcatttgcattataacttctccaatacctggggcggcaatttatttatatatgaatccttttgggagtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S391_45V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18349171|gb|BJ181220.1|BJ181220
EST:     TAATGCGAATCTCATAGCTGTCATTCAACGTGGTGTGGTCGTAGAAACAG                         GGTCACATGATGAACTTTTATCCAGACCAGACGGAGCATATACACAACTGA
genomic: TAATGCGAATCTCATAGCTGTCATTCAACGTGGTGTGGTCGTAGAAACAGgtaagggatc ... gagtgtgcagGGTCACATGATGAACTTTTATCCAGACCAGACGGAGCATATACACAACTGA
EST: gi|22492073|gb|BU051996.1|BU051996
EST:     TAATGCGAATCTCATAGCTGTCATTCAACGTGGTGTGGTCGTAGAAACAG                         GGTCACATGATGAACTTTTATCCAGACCAGACGGAGCATATACACAACTGA
genomic: TAATGCGAATCTCATAGCTGTCATTCAACGTGGTGTGGTCGTAGAAACAGgtaagggatc ... gagtgtgcagGGTCACATGATGAACTTTTATCCAGACCAGACGGAGCATATACACAACTGA