1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGAATACGTTATGTGCAATGGTTGCAAGAGTCCGGACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatcactggtcctgctattctgtcagtgttgttttaggctactcctcatcactctctgtgcttcatctcgagaaaagaggatgacatcagtcgcatttcacaatcatggtgtaatgattcttctacctcgtttcttttcag
species | Physcomitrella patens |
transcript | PP1S386_20V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37851434|gb|BJ609442.1|BJ609442
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37852974|gb|BJ610982.1|BJ610982
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|7287158|gb|AW599645.1|AW599645
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37845334|gb|BJ603342.1|BJ603342
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37847301|gb|BJ605309.1|BJ605309
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37839405|gb|BJ597413.1|BJ597413
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37828685|gb|BJ586697.1|BJ586697
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|7584303|gb|AW700198.1|AW700198
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37845391|gb|BJ603399.1|BJ603399
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37848802|gb|BJ606810.1|BJ606810
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|162274742|gb|FC450808.1|FC450808
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGGEST: gi|37849172|gb|BJ607180.1|BJ607180
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
EST: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAG TGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
genomic: ACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatc ... ttcttttcagTGTGGATGCTCGCGATCGGTAGCGCCAATCAAAGCCGGTTATGTTGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAATACGTTATGTGCAATGGTTGCAAGAGTCCGGACACTATCCTTACGAAGGAGAATCGGTTGTTCTTTCTTCGTTGTGAGCAGgtgagtaatcactggtcctgctattctgtcagtgttgttttaggctactcctcatcactctctgtgcttcatctcgagaaaagaggatgacatcagtcgcatttcacaatcatggtgtaatgattcttctacctcgtttcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG