1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGTGAGAACCCACATCAGCGGGCTGCTTTCTACGAAGACAAGTCCCTCTGTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAGgtgagtacctgataagatgacatacttttattgccccgaatgtgcgtcatgagttgattactgtataatcaccattaatagtcttgtgttttttggcatattgtttgtggctgcgagtcaggttctgagtgaagatgttgaaccatgtttgttgaacag
species | Physcomitrella patens |
transcript | PP1S372_60V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAG GAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTAEST: gi|162156956|gb|FC333110.1|FC333110
genomic: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAGgtgagtacct ... tgttgaacagGAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTA
EST: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAG GAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTAEST: gi|162159909|gb|FC336162.1|FC336162
genomic: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAGgtgagtacct ... tgttgaacagGAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTA
EST: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAG GAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTAEST: gi|162177334|gb|FC353491.1|FC353491
genomic: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAGgtgagtacct ... tgttgaacagGAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTA
EST: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAG GAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTA
genomic: GTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAGgtgagtacct ... tgttgaacagGAAATGTCATACAACAACTATTTGGATGCCGACGCAGCCTGGAATTGTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGAGAACCCACATCAGCGGGCTGCTTTCTACGAAGACAAGTCCCTCTGTGAGTTTGGAGCAGGGGGCATCGCCACTTCAGTCCAATATCACGGCAAGgtgagtacctgataagatgacatacttttattgccccgaatgtgcgtcatgagttgattactgtataatcaccattaatagtcttgtgttttttggcatattgtttgtggctgcgagtcaggttctgagtgaagatgttgaaccatgtttgttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG