1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACTACCGCTTTGATTGAAAATACCAAAATGGTGAAGGGCGCGAAGGTGGAGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttatcaatccctaaatgcgtataaatccttctactgtctaatattttcaaccatcttgcattgagagttggaatatatctggttatgtggaagttaagttaaaactccaaccttaatctgcttattttgttacggttgtcctgcacag
species | Physcomitrella patens |
transcript | PP1S32_182V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162152941|gb|FC329243.1|FC329243
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162172189|gb|FC348754.1|FC348754
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162156021|gb|FC332188.1|FC332188
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162197334|gb|FC372296.1|FC372296
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162162061|gb|FC338852.1|FC338852
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162151213|gb|FC327693.1|FC327693
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162164955|gb|FC342146.1|FC342146
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCAEST: gi|162173783|gb|FC349959.1|FC349959
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
EST: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAG CTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
genomic: AGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttat ... tcctgcacagCTTTGGGAGGGACTTGCTGAGCGGGTAGGGAATGTTATGAAAGAGTTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTACCGCTTTGATTGAAAATACCAAAATGGTGAAGGGCGCGAAGGTGGAGAATAACAAATTTTGCGTGTCAGTGCACTTCCGACGGGTGAAAGAGGAGgtttgtttatcaatccctaaatgcgtataaatccttctactgtctaatattttcaaccatcttgcattgagagttggaatatatctggttatgtggaagttaagttaaaactccaaccttaatctgcttattttgttacggttgtcctgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG