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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCCCGAAAGTCCATTTTCAAGCCCACTGGGAATGAACAAGCAGAAGATCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtgtagcagcgacgtgtactttttctctcgtgttatctgacttgaattgatttcttgcgtgctgggaggcccataatgttcaaattttctcac...

Basic information

species Physcomitrella patens
transcript PP1S31_251V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162182952|gb|FC359816.1|FC359816
EST:     TCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAG                         AACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
genomic: TCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtg ... tgagttgcagAACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
EST: gi|18341698|gb|BJ173733.1|BJ173733
EST:     AGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAG                         AACACTCAGGAGACTCTGTTCAGTTAGAATGCAGCAACACTGTTTGCATCC
genomic: AGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtg ... tgagttgcagAACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
EST: gi|162156789|gb|FC333601.1|FC333601
EST:     TCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAG                         AACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
genomic: TCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtg ... tgagttgcagAACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
EST: gi|162242461|gb|FC418960.1|FC418960
EST:     TCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAG                         AACACTCAGGAGACTCTGTTCA
genomic: TCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtg ... tgagttgcagAACACTCAGGAGACTCTGTTCA
EST: gi|162242460|gb|FC418959.1|FC418959
EST:     AGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAG                         AACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
genomic: AGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtg ... tgagttgcagAACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
EST: gi|162209785|gb|FC385719.1|FC385719
EST:     TCTNTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAG                         AACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC
genomic: TCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtg ... tgagttgcagAACACTCAGGAGACTCTGTTCAGTTGGAATGCAGCAACACTGTTTGCATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCCCGAAAGTCCATTTTCAAGCCCACTGGGAATGAACAAGCAGAAGATCTTTTCGTTGCCAGAGAAGTTGAATGATTTAAGTATTCAGGGTTCGCAGgtggggcgtgtagcagcgacgtgtactttttctctcgtgttatctgacttgaattgatttcttgcgtgctgggaggcccataatgttcaaattttctcac

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