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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGTTGCACTACCAACTGTCTCGCACCTCTTGCGAAGGTTATCCAGGACAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatggttcctttagaggtctttgagcatgtttgggtgtcatttgtgggtgcttttacattgagcaagacttaatttggatgatgatgtaaatggtttctgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S309_73V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67570882|gb|BJ943706.1|BJ943706
EST:     CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG                         CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGT
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGT
EST: gi|208369274|gb|DC956065.1|DC956065
EST:     GGCTCATGACCACTGTGCATGCCACCACTG                         CTACCCAGAAGACCGTGGAC-GTCCATCTGGAAAGGACTGGCGTGGAGGAC
genomic: GGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: gi|162152341|gb|FC328528.1|FC328528
EST:     CCACTGTGCATGCCACCACTG                         CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
genomic: CCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: gi|67726807|gb|BJ977066.1|BJ977066
EST:     CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG                         CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: gi|208388488|gb|DC957070.1|DC957070
EST:     CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG                         CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: gi|208394113|gb|DC957194.1|DC957194
EST:     CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG                         CTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
genomic: CAACTTCGGCATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
EST: gi|67726975|gb|BJ977234.1|BJ977234
EST:     CATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTG                         CTACCCAGAAGACCGTGGACGGTCCCATCTGGAAAGGACTGGCGTGGAGGA
genomic: CATTGAGGAAGGGCTCATGACCACTGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGT-CCATCTGGAAAGGACTGGCGTGGAGGA
EST: gi|208389399|gb|DC953237.1|DC953237
EST:     TGTGCATGCCACCACTG                         CTA-CCAGAAG-NCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC
genomic: TGTGCATGCCACCACTGgtaatgatgg ... ctgtgtgcagCTACCCAGAAGACCGTGGACGGTCCATCTGGAAAGGACTGGCGTGGAGGAC