1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTACCGTGCTCCGGAGCTTATTTTTGGAGCGACGGAGTACACGACTGCCATAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAGgtactcggtcgccgatgggctctcttccacttcgaagagttgtttcaagtgacgcggggggtcgttgactggggctgttgattgttttgtagcaagctaa...
species | Physcomitrella patens |
transcript | PP1S306_43V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAG CCTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAGEST: gi|67723790|gb|BJ974049.1|BJ974049
genomic: TAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAGgtactcggtc ... gggattgcagCCTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAG
EST: TGCGTGATGGCAGAGCTTNTACTAGGACAG CCTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAGEST: gi|100449000|gb|CJ973299.1|CJ973299
genomic: TGCGTGATGGCAGAGCTTCTACTAGGACAGgtactcggtc ... gggattgcagCCTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAG
EST: TAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAG CCTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAG
genomic: TAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAGgtactcggtc ... gggattgcagCCTTTGTTTCCTGGAGAGAGTGGAGTGGATCAATTGGTGGAAATCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACCGTGCTCCGGAGCTTATTTTTGGAGCGACGGAGTACACGACTGCCATAGATATATGGTCGATGGGTTGCGTGATGGCAGAGCTTCTACTAGGACAGgtactcggtcgccgatgggctctcttccacttcgaagagttgtttcaagtgacgcggggggtcgttgactggggctgttgattgttttgtagcaagctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT