1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATACTGTGCATTGCGAGCCCTTCTGGATACGTGTCCGGATTCAGCCTCTTTGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttcattgtatggccctcgttttattaccttggtgtttctcattaccatgtggcatatgaatcatggcatataagtttatttttatttttatttttcagctccttatttatctgttactcaaggattttcaaatttgtacatcgttaatgattcacctttaccgttaatccaacgtag
species | Physcomitrella patens |
transcript | PP1S2_377V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAG GTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCCEST: gi|162213750|gb|FC390365.1|FC390365
genomic: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttca ... tccaacgtagGTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCC
EST: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAG GTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCCEST: gi|208381823|gb|DC923389.1|DC923389
genomic: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttca ... tccaacgtagGTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCC
EST: TGGCTGATGAGAGCCGTATTAGAGCAATTGCTTTGTTCGACAATGAGGAG GTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCCEST: gi|162255177|gb|FC431487.1|FC431487
genomic: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttca ... tccaacgtagGTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCC
EST: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAG GTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCCEST: gi|208346239|gb|DC909531.1|DC909531
genomic: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttca ... tccaacgtagGTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCC
EST: TGGCTGATGAGAGCCGTATTAGAGCAATTGCTTTGTTCGACAATGAGGAG GTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCCEST: gi|37847013|gb|BJ605021.1|BJ605021
genomic: TGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttca ... tccaacgtagGTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCC
EST: CTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAG GTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCC
genomic: CTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttca ... tccaacgtagGTAGGGTCAGATTCAGCTCAAGGGGCGGGATCACCTGTGATGTTTCAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTGTGCATTGCGAGCCCTTCTGGATACGTGTCCGGATTCAGCCTCTTTGGCTGATGAGAGCTGTATTAGAGCAATTGCTTTGTTCGACAATGAAGAGgtaatcttcattgtatggccctcgttttattaccttggtgtttctcattaccatgtggcatatgaatcatggcatataagtttatttttatttttatttttcagctccttatttatctgttactcaaggattttcaaatttgtacatcgttaatgattcacctttaccgttaatccaacgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA