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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCGAGATGAAATGCAGTGGGGAGAGGCTGGTCCGCCTCCGTTACTGGTGAAAATTGCTCCTGATTTGTCAAAGCAGGACTTGGCTGACATTGCAGCGgtaaaattaacttttgcccgtggttgttgtttgctgtttcgtatgtttgtacgagaaatccgccactcgtttatgatacttctcactttctctatgacctgtatgtaaaaagtcaaatagttctgcaagtcctaatcaatattgctttcctttattgtttgctgttctcag

Basic information

species Physcomitrella patens
transcript PP1S29_152V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S29_152V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA20G23670.1 (Glycine max), 5'ss of exon 6
TGCTCGAGATGAAATGCAGTGGGGAGAGGCTGGTCCGCCTCCGTTACTGGTGAAAATTGCTCCTGATTTGTCAAAGCAGGACTTGGCTGACATTGCAGCGgtaaaattaacttttgcccgtggttgttgtttgctgtttcgtatgtttgtacgagaaatccgccactcgtttatgatacttctcactttctctatgacctgtatgtaaaaagtcaaatagttctgcaagtcctaatcaatattgctttcctttattgtttgctgttctcag
|||| | ||||||||||| ||||| ||||  || || ||||| || ||||| ||||||||||| |||||||||||  | ||| | |  || ||||| || ||||           ||  |||  ||||  |   | | || ||| ||  ||      |||    |  | | ||| | | ||    ||||   | |                                                                            
TGCTTGTGATGAAATGCAATGGGGTGAGGAGGGCCCACCTCCATTGCTGGTAAAAATTGCTCCAGATTTGTCAAAAGAAGACCTTGAAGATATTGCTGCAgtaa-----------gcatgtgcatgttaatatatttctcctatcttcata------atctcatatgc-tctataacagtttctgctttgattgtag--------------------------------------------------------------------------

upper sequence: PP1S29_152V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA10G43220.1 (Glycine max), 5'ss of exon 6
TGCTCGAGATGAAATGCAGTGGGGAGAGGCTGGTCCGCCTCCGTTACTGGTGAAAATTGCTCCTGATTTGTCAAAGCAGGACTTGGCTGACATTGCAGCGgtaaaattaacttttgcccgtggttgttgtttgctgtttcgtatgtttgtacgagaaatccgccactcgtttatgatacttctcactttctctatgacctgtatgtaaaaagtcaaatagttctgcaagtcctaatcaatattgctttcctttattgtttgctgttctcag
|||||| ||||||||||| ||||| ||||  || || ||||| || ||||| ||||| ||||| |||||||||||  | ||| | |  || ||||| || ||||           ||  |||  ||||  |   | | || ||| |||  |     ||||    |  | | ||| | | ||    || |   | |                                                                            
TGCTCGTGATGAAATGCAATGGGGTGAGGAGGGCCCACCTCCATTGCTGGTAAAAATAGCTCCAGATTTGTCAAAAGAAGACCTTGAAGATATTGCTGCAgtaa-----------gcatgtgcatgttaatgtatttctcctatattttcat----aatctcatatgc-tctataacagtttcagctataattgtag--------------------------------------------------------------------------