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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTGTGGCATATTATTTGATGCTGGACAACCGTCGGCGGCTTTCAAATGGTTATCTTTGCTCTGAATTCAATGAGGGAAAGgttggtttagggctgtcaagacttatcttgttcatgatctcatgcgtccttaaattgagtaggtgcaaaatcgttcatttatggtattctttggctggcacggcaaacacattccatttttgttttgatttcttctcagaacttaaggtaaagcattgtctaaagtgaggagtttatttcttgatgcag

Basic information

species Physcomitrella patens
transcript PP1S28_12V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386596|gb|BY970137.1|BY970137
EST:     GTCGGCGGCTTTCAAATGGATATCTTTGCTCTGAATTCAATGAGGGAAAG                         GAGCACTTGATGTCTCCAATGGATGCATTTAACGGGACGCCTAGATCAGGT
genomic: GTCGGCGGCTTTCAAATGGTTATCTTTGCTCTGAATTCAATGAGGGAAAGgttggtttag ... cttgatgcagGAGCACTTGATGTCTCCAATGGATGCATTTAACGGGACGCCAAGATCTGGT
EST: gi|162156220|gb|FC332595.1|FC332595
EST:     GTCGGCGGCTTTCAAATGGTTATCTTTGCTCTGAATTCAATGAGGGAAAG                         GAGCACTTGATGTCTCCAATGGATGCATTTAACGGGACGCCAAGATCTGGG
genomic: GTCGGCGGCTTTCAAATGGTTATCTTTGCTCTGAATTCAATGAGGGAAAGgttggtttag ... cttgatgcagGAGCACTTGATGTCTCCAATGGATGCATTTAACGGGACGCCAAGATCTGGT
EST: gi|162208317|gb|FC384629.1|FC384629
EST:     GTCGGCGGCTTTCAAATGGTTATCTTTGCTCTGAATTCAATGAGGGAAAG                         GAGCACTTGATGTCTCCAATGGATGCATTTAACGGGACGCCAAGATCTGGT
genomic: GTCGGCGGCTTTCAAATGGTTATCTTTGCTCTGAATTCAATGAGGGAAAGgttggtttag ... cttgatgcagGAGCACTTGATGTCTCCAATGGATGCATTTAACGGGACGCCAAGATCTGGT