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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATTGTGTATTCTCTACTACCAGCTTGCACTCAACCAGATTTACACTCTGGTATCCCTTTTCAGGCACAGGCTATAATTGCTAACCCTCCAGCATATGgtatgcaagttttagaacctccaatcttttctaattttccaaatttttcgagtgatggccttcttggacacagcaagcaaggaagggatacaacaataat...

Basic information

species Physcomitrella patens
transcript PP1S281_20V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S281_20V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os04g04254.1 (Oryza sativa), 5'ss of exon 5
TCGATTGTGTATTCTCTACTACCAGCTTGCACTCAACCAGATTTACACTCTGGTATCCCTTTTCAGGCACAGGCTATAATTGCTAACCCTCCAGCATATGgtatgcaagttttagaacctccaatct--tttctaattttccaaatttttcgagtgatggccttcttggaca-cagcaagcaaggaagggatacaacaataat
   ||| | |  ||| | ||||| || ||||   | || |||    || ||||||| |||||  | |   | ||||| ||||||||||||||||||||||||  | |  | |||  | ||      |  |||||     |     ||  |       |  | | |  |   | |  ||||   |      |||     |    
GAAATTATATTCTCTTTGCTACCTGCGTGCAAGGAGCCTGATCCTGACACTGGTATTCCTTTCAAAGTGGATGCTATCATTGCTAACCCTCCAGCATATGgtcagtatatcttaccagctttggattgatttcttgcgctttgctttactttctctctaccttacaagtgtaactccaagtttgtttattatatgctcaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162248306|gb|FC423691.1|FC423691
EST:     TGGTATCCCTTTTCAGGCACAGGCTATAATTGCTAACCCTCCAGCATATG                         GACATGTACATGTAGCTGAGCACCTGAAGATACCGTTGCACATCTTTTTTA
genomic: TGGTATCCCTTTTCAGGCACAGGCTATAATTGCTAACCCTCCAGCATATGgtatgcaagt ... ctttttacagGACATGTACATGTAGCTGAGCACCTGAAGATACCGTTGCACATCTTTTTTA
EST: gi|100412198|gb|BY956462.1|BY956462
EST:     TGGTATCCCTTTTCAGGCACAGGCTATAATTGCTAACCCTCCAGCATATG                         GACATGTACATGTAGCTGAGCACCTGAAGATACCGTTGCACATCTTTTTTA
genomic: TGGTATCCCTTTTCAGGCACAGGCTATAATTGCTAACCCTCCAGCATATGgtatgcaagt ... ctttttacagGACATGTACATGTAGCTGAGCACCTGAAGATACCGTTGCACATCTTTTTTA