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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACTTGGCACTCCAAATGAAGAAGTTTGGCCAGGTGTAACTTCATTGCCAGATTTCAAGACTGCTTTTCCAAAGTGGCCTCCGAAGgtatgtataaaatactgttctatcatctagctgtttgatgctgactttctaagagagacggtcataatgtttcagaagggttaggctagggtttaagaggttagaagcgaagatcacagatatgcaaacctgtgatgcctttgatctatatttcttatgcggagcatgttgacgagcag

Basic information

species Physcomitrella patens
transcript PP1S25_198V6.7
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S25_198V6.7 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv15s0045g00310.t01 (Vitis vinifera), 5'ss of exon 7
GACACTTGGCACTCCAAATGAAGAAGTTTGGCCAGGTGTAACTTCATTGCCAGATTTCAAGACTGCTTTTCCAAAGTGGCCTCCGAAGgtatgtataaaatactgttctatcatctagctgtttgatgctgactttctaagagagacggtcataatgtttcagaagggttaggctagggtttaagaggttagaagcgaagatcacagatatgcaaacctgtgatgcctttgatctatatttcttatgcggagcatgttgacgagcag
|  | | ||||| |||||||| ||    |||||||| || ||||| ||||| ||||| ||| |||| ||||| ||||||||||| ||||||  |      |  ||      |||||| ||  |   |  | |  || |  || |||     ||  || |||       ||                                                                                                 
GGTATTGGGCACACCAAATGAGGATACATGGCCAGGAGTGACTTCTTTGCCTGATTTTAAGTCTGCCTTTCCTAAGTGGCCTCCTAAGgtaaatg---ggttttgcatgtgcatctatctcatgatttttcatattgtt-gaaagattcatattgtgcttcctctactttgcag---------------------------------------------------------------------------------------------