Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCCGAACTACTTGCTTCTTCCCGCCAATGCCCCCAAGAACGCCCATCACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgcccattgttacacgaaattgcatctgctgtctttctccagtgtcatcagtttctggtggatgcgactctgacatgtctgtatcctctgacag

Basic information

species Physcomitrella patens
transcript PP1S259_126V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S259_126V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: EFJ33688 (Selaginella moellendorffii), 5'ss of exon 4
CGGCCCGAACTACTTGCTTCTTCCCGCCAATGCCCCCAAGAACGCCCATCACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgt--gcccattgttacacgaaattgcatctgct--gtctttctccagtgtcatcagtttctggtggatgcgactctgacatgtctgtatcctctgacag-----------------
 || ||||||||  |  | || || || ||||| ||||||  ||| |||||||| |||||||| |||||||||||||| ||  | ||  | ||||| ||||| ||   |   | ||||   |    ||   | || |    |||| |  | ||       ||| |  | | |  | || |   || | | || || ||    |                 
TGGACCGAACTATCTCATGCTGCCTGCAAATGCACCCAAGTGCGCACATCACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAGgtatggtggtggaatgttctccagttttttctttgtttgagctttttttaatg------atttgtactcgttctgtctttttgatttttctaaccactcgtcgtgaactgtcaaacacag

upper sequence: PP1S259_126V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: EFJ37039 (Selaginella moellendorffii), 5'ss of exon 4
CGGCCCGAACTACTTGCTTCTTCCCGCCAATGCCCCCAAGAACGCCCATCACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgt--gcccattgttacacgaaattgcatctgct--gtctttctccagtgtcatcagtttctggtggatgcga----ctctgacatgtctgtatcctctgacag------
 || ||||||||  |  | || || || ||||| ||||||  ||| |||||||| |||||||| |||||||||||||| ||  | ||  | ||||| ||||| ||   |   | ||||   |    ||   | || |    |||| |  | ||   |    |  |  ||  |         ||| ||   ||    |   ||| ||       
TGGACCGAACTATCTCATGCTGCCTGCAAATGCACCCAAGTGCGCACATCACAATAATCATCACGAAGGCTTTATGAACTTCATGCACAGGGATGAGGAGgtatggtggtggaatgttctccagttttttctttgtttgagctttttttaatgatttgtactcgttctgtcttttgatttttctaaccactcgtcgtgaactgtcaaacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362855|gb|DC950805.1|DC950805
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208365873|gb|DC947755.1|DC947755
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208354504|gb|DC953868.1|DC953868
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208386860|gb|DC953513.1|DC953513
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208371335|gb|DC944499.1|DC944499
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208368949|gb|DC955034.1|DC955034
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208375077|gb|DC956445.1|DC956445
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208371762|gb|DC951796.1|DC951796
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208355378|gb|DC949858.1|DC949858
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208362144|gb|DC954311.1|DC954311
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67720675|gb|BJ970934.1|BJ970934
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208351103|gb|DC921349.1|DC921349
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67720645|gb|BJ970904.1|BJ970904
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCAGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208358571|gb|DC946532.1|DC946532
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67725270|gb|BJ975529.1|BJ975529
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGGACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208373640|gb|DC952465.1|DC952465
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208366254|gb|DC943814.1|DC943814
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208367547|gb|DC955699.1|DC955699
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208353738|gb|DC949772.1|DC949772
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208363794|gb|DC943251.1|DC943251
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCCTCATCGTGATGAANAN                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208361562|gb|DC950292.1|DC950292
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208389599|gb|DC945823.1|DC945823
EST:     ACAACAACCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208387246|gb|DC945545.1|DC945545
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67723866|gb|BJ974125.1|BJ974125
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208391971|gb|DC949434.1|DC949434
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208382500|gb|DC923170.1|DC923170
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208353564|gb|DC946344.1|DC946344
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|37824503|gb|BJ582569.1|BJ582569
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208358965|gb|DC950142.1|DC950142
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67724238|gb|BJ974497.1|BJ974497
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208369883|gb|DC944249.1|DC944249
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208381292|gb|DC919182.1|DC919182
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208392829|gb|DC957096.1|DC957096
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67724236|gb|BJ974495.1|BJ974495
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208360610|gb|DC957849.1|DC957849
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208359304|gb|DC954199.1|DC954199
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208362640|gb|DC943783.1|DC943783
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGNCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208388440|gb|DC957050.1|DC957050
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208400316|gb|DC924954.1|DC924954
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67726169|gb|BJ976428.1|BJ976428
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208369501|gb|DC931697.1|DC931697
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208369250|gb|DC944567.1|DC944567
EST:     ACAACAATCATCATGAAGGCTTTATAAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208346009|gb|DC921254.1|DC921254
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67703874|gb|BJ964107.1|BJ964107
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208368881|gb|DC947439.1|DC947439
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67720132|gb|BJ970391.1|BJ970391
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208394053|gb|DC957134.1|DC957134
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208356029|gb|DC946203.1|DC946203
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208372589|gb|DC944596.1|DC944596
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67726447|gb|BJ976706.1|BJ976706
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGCTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208391916|gb|DC949379.1|DC949379
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208372250|gb|DC948053.1|DC948053
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208366641|gb|DC955661.1|DC955661
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208368096|gb|DC947656.1|DC947656
EST:     ACANCAATCATCATGAAGGCNTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67728284|gb|BJ978543.1|BJ978543
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208362514|gb|DC943741.1|DC943741
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|37830045|gb|BJ588057.1|BJ588057
EST:     ACANCAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAGCGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208369879|gb|DC944245.1|DC944245
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208361228|gb|DC957697.1|DC957697
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208349007|gb|DC921695.1|DC921695
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208353341|gb|DC946289.1|DC946289
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208361060|gb|DC946693.1|DC946693
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208397218|gb|DC920861.1|DC920861
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208365847|gb|DC955450.1|DC955450
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208396763|gb|DC924347.1|DC924347
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67726352|gb|BJ976611.1|BJ976611
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208386921|gb|DC956918.1|DC956918
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67725837|gb|BJ976096.1|BJ976096
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67728022|gb|BJ978281.1|BJ978281
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208365798|gb|DC947736.1|DC947736
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|37824007|gb|BJ582073.1|BJ582073
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|67728208|gb|BJ978467.1|BJ978467
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208394129|gb|DC957210.1|DC957210
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCCTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208389271|gb|DC933299.1|DC933299
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGA
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGA
EST: gi|67725278|gb|BJ975537.1|BJ975537
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208377437|gb|DC927083.1|DC927083
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAANTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208368387|gb|DC955556.1|DC955556
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208364353|gb|DC950654.1|DC950654
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
EST: gi|208360763|gb|DC946473.1|DC946473
EST:     ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAG                         GTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC
genomic: ACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 17

CGGCCCGAACTACTTGCTTCTTCCCGCCAATGCCCCCAAGAACGCCCATCACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgccc ... cctctgacagGTGAACTACTGGCCATCGCGCTTTGACTCACTTCGTATGTCGGAACGTTTCCCCATCTCCAAGGCTCACGTCAGTGGCATCAGAGAGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCCCGAACTACTTGCTTCTTCCCGCCAATGCCCCCAAGAACGCCCATCACAACAATCATCATGAAGGCTTTATGAATTTTCTTCATCGTGATGAAGAGgtgtgtgcccattgttacacgaaattgcatctgctgtctttctccagtgtcatcagtttctggtggatgcgactctgacatgtctgtatcctctgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA