1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAACAGATTGTGAAGTTGACTTCGCTCCTCCACTTGATTATAAAGAGCCAGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacacaatttgtacaagacgtaattgaattaccgacttgaatttcttttggaatccgtagtgcctaaagtcttcttgcgctttctatacctccctgaagtaattttctattgttcccccttttttgttaaatag
species | Physcomitrella patens |
transcript | PP1S245_32V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|100385818|gb|BY951012.1|BY951012
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTNCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCCTGAACCTGAGGAGCAAAAATTCAGTGCCCTCACGEST: gi|208373274|gb|DC948562.1|DC948562
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCC-TGAACCTGAGGAGCCAAAATTCAGTGCCTTCACG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208393488|gb|DC949650.1|DC949650
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208387770|gb|DC941339.1|DC941339
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCC-TGTTTCTGTTCCTGCTCAGTCATCACAAN ATGCCACACCACCTCCTGAACCTGAGGAGEST: gi|67508675|gb|BJ941536.1|BJ941536
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGEST: gi|208349271|gb|DC906385.1|DC906385
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAAC-TGAGGAGCNAAA-TTCA-TGCCTNCACGGEST: gi|162206110|gb|FC383103.1|FC383103
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208346232|gb|DC905221.1|DC905221
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAA-TTCAGTGCCTTCACGGEST: gi|208352262|gb|DC906337.1|DC906337
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAEST: gi|208395706|gb|DC920268.1|DC920268
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGA
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|162206109|gb|FC383102.1|FC383102
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|67691900|gb|BJ952133.1|BJ952133
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208366055|gb|DC935844.1|DC935844
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCC-TGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGA-CCTGAEST: gi|208365926|gb|DC951155.1|DC951155
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGA
EST: AGAAAGGGTTNCTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|162243302|gb|FC417003.1|FC417003
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208372135|gb|DC940317.1|DC940317
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGC-ACACCACCTCCTGAEST: gi|208390049|gb|DC938104.1|DC938104
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGA
EST: AGAAAGGGTTACTCCTCCCCCTGNTTCTGTTCCTGCTCAGTCATCACAAN ATGCCACACCACCTCCTGAACCTGAGGAGCEST: gi|208394989|gb|DC920220.1|DC920220
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGC
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208358250|gb|DC930691.1|DC930691
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAEST: gi|208370760|gb|DC948269.1|DC948269
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGA
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208357678|gb|DC934130.1|DC934130
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGNTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGEST: gi|208374165|gb|DC945211.1|DC945211
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208366022|gb|DC935839.1|DC935839
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAA-TTCAGTGCCTNCACGGEST: gi|208374981|gb|DC956391.1|DC956391
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208363142|gb|DC954342.1|DC954342
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|18338628|gb|BJ170652.1|BJ170652
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208393483|gb|DC949645.1|DC949645
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGGEST: gi|208356440|gb|DC934430.1|DC934430
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
EST: AGAAAGGGTTACTCCTCCCC-TGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAEST: gi|208386327|gb|DC932823.1|DC932823
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGA
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACAC-ACCTCCTGAACEST: gi|208387581|gb|DC953323.1|DC953323
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAAC
EST: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAG ATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
genomic: AGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacac ... tgttaaatagATGCCACACCACCTCCTGAACCTGAGGAGCCAAAATTCAGTGCCTTCACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACAGATTGTGAAGTTGACTTCGCTCCTCCACTTGATTATAAAGAGCCAGAAAGGGTTACTCCTCCCCCTGTTTCTGTTCCTGCTCAGTCATCACAAGgtatgtacacaatttgtacaagacgtaattgaattaccgacttgaatttcttttggaatccgtagtgcctaaagtcttcttgcgctttctatacctccctgaagtaattttctattgttcccccttttttgttaaatag
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