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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACACAGAATAGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaaccatcgatccagtcagagatttattgcagattgtagtttctttgtttggatttcgtgtacgtcataaatattacaaacttatgcactctgttc...

Basic information

species Physcomitrella patens
transcript PP1S23_46V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37841690|gb|BJ599698.1|BJ599698
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162165937|gb|FC340962.1|FC340962
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162193399|gb|FC368911.1|FC368911
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTANGCA-GTTTG
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTA-GCAAGTTTG
EST: gi|162260719|gb|FC435371.1|FC435371
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162161664|gb|FC339079.1|FC339079
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCNAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAAGTT-GTTGCT
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAA-GTTTGTTGCT
EST: gi|162263880|gb|FC438668.1|FC438668
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162205182|gb|FC381280.1|FC381280
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATTTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162196916|gb|FC373308.1|FC373308
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162165470|gb|FC340581.1|FC340581
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162191850|gb|FC367999.1|FC367999
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162260718|gb|FC435370.1|FC435370
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162174387|gb|FC350458.1|FC350458
EST:     GGCCAATGGTTCACATTGGCTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: GGCCAATGGTTCACATTGG-TGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162193398|gb|FC368910.1|FC368910
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
EST: gi|162161663|gb|FC339078.1|FC339078
EST:     AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAG                         ATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC
genomic: AGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaacca ... tgtgttgcagATTCTCGGCATCGTGCTGCCACTATGTACATTACTAGCAAGTTTGTTGCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGAAGGCCGCACATGCTGGCATGTTTGAGTTAGCACGGACACAGAATAGGCCAATGGTTCACATTGGTGGGTGATACGGAAGTGCATCTACTCCAAGgttagaaccatcgatccagtcagagatttattgcagattgtagtttctttgtttggatttcgtgtacgtcataaatattacaaacttatgcactctgttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG