1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGTGTCGCTTATGGCAGCGCTGGGATTTCTTCTGTATGGTGGAAAgtaagttctaatagctctggtatcacgcacgttggtatgttaatttgtaggtttacatttgggaatttagagcgtgaacttgtttcctaatatgttaatgtgttggtgttgtatcag
species | Physcomitrella patens |
transcript | PP1S237_67V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCAGCTGTGTCGCTTATGGCAGCGCTGGGATTTCTTCTGTATGGTGGAAA GTTGTTCCTGATGTTGAGGCGTTTCCCCATTGAATCAAAGGGCCGCAGGAAEST: gi|208366076|gb|DC954917.1|DC954917
genomic: GCAGCTGTGTCGCTTATGGCAGCGCTGGGATTTCTTCTGTATGGTGGAAAgtaagttcta ... gttgtatcagGTTGTTCCTGATGTTGAGGCGTTTCCCCATTGAATCAAAGGGCCGCAGGAA
EST: CTGTGTCGCTTATGGCAGCGCTGGGATTTCTTCTGTATGGTGGAAA GTTGTTCCTGATGTTGAGGCGTTTCCCCATTGAATCAAAGGGCCGCAGGAAEST: gi|208370515|gb|DC952218.1|DC952218
genomic: CTGTGTCGCTTATGGCAGCGCTGGGATTTCTTCTGTATGGTGGAAAgtaagttcta ... gttgtatcagGTTGTTCCTGATGTTGAGGCGTTTCCCCATTGAATCAAAGGGCCGCAGGAA
EST: GCAGCTGTGTCGCTTAT-GCAGCGCT-GGATTTCTTCTGTATGGTGGAAA GNTGTTCCTGATGTTGAGGCGTTTCCCCATTGAATCAAAGGNCCGCAGGAA
genomic: GCAGCTGTGTCGCTTATGGCAGCGCTGGGATTTCTTCTGTATGGTGGAAAgtaagttcta ... gttgtatcagGTTGTTCCTGATGTTGAGGCGTTTCCCCATTGAATCAAAGGGCCGCAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGTCGCTTATGGCAGCGCTGGGATTTCTTCTGTATGGTGGAAAgtaagttctaatagctctggtatcacgcacgttggtatgttaatttgtaggtttacatttgggaatttagagcgtgaacttgtttcctaatatgttaatgtgttggtgttgtatcag
- - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - GGTGGA