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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCACATTGTTCCATTACTCGGCTATTCTGTAGATGCCAAACATCTCATCCTTGTTTACGAATTTCTTCCTAATGGAAACTTGGACGATCACCTTCATGgtactacattttatttctatccaaatctaagcgtctttaaattggaatttctatactacaaatttatggtttacaaactttgttttgttttgttttgtttgtttttcaggtgtatttgtgtgtgaaattttctaaacttaacccggaaatgggattgtgattctag

Basic information

species Physcomitrella patens
transcript PP1S226_111V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100384955|gb|BY969690.1|BY969690
EST:     CCTTGTTTACGAATTTCTTCCTAATGGAAACTTGGACGATCACCTTCATG                         GTGGCNAGGACTCAGCTGTGATTCCATGGGAAAGT-CGCTATAGGA
genomic: CCTTGTTTACGAATTTCTTCCTAATGGAAACTTGGACGATCACCTTCATGgtactacatt ... gtgattctagGTGGCAAGGACTCAGCTGTGATTCCATGGGAA-GTTCGCTATAGGA