1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTCGAGACCTGATCCGGGGGCTCTTGATGAAGGAGCCTGTGCTGCGGCTGGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAGgtattttgggaggcttttgagtggtcgatctacttgcgagtggttgtgggtgtggtttggaagtttgctccacattcaatcgtgctatgagtagtggtattctgacgtggttttgagggtgagttgcag
species | Physcomitrella patens |
transcript | PP1S224_73V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAG GCGTAAACTGGGCGCTCATACGGTGCACAAATCCCCCAGAGGTACCCCGACEST: gi|37831697|gb|BJ589709.1|BJ589709
genomic: GGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAGgtattttggg ... tgagttgcagGCGTAAACTGGGCGCTCATACGGTGCACAAATCCCCCAGAGGTACCCCGAC
EST: GGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAG GCGTAAACTGGGCGCTCATACGGTGCACAAATCCCCCAGAGGTACCCCGACEST: gi|162150408|gb|FC326680.1|FC326680
genomic: GGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAGgtattttggg ... tgagttgcagGCGTAAACTGGGCGCTCATACGGTGCACAAATCCCCCAGAGGTACCCCGAC
EST: GGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAG GCGTAAACTGGGCGCTCATACGGTGCACAAATCCCCCAGAGGTACCCCGAC
genomic: GGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAGgtattttggg ... tgagttgcagGCGTAAACTGGGCGCTCATACGGTGCACAAATCCCCCAGAGGTACCCCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGAGACCTGATCCGGGGGCTCTTGATGAAGGAGCCTGTGCTGCGGCTGGCGTCGAAGAGGGGAGCTGGCGAGATCAAGGCGCATCCATTCTTCGAAGgtattttgggaggcttttgagtggtcgatctacttgcgagtggttgtgggtgtggtttggaagtttgctccacattcaatcgtgctatgagtagtggtattctgacgtggttttgagggtgagttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA