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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTTATGAGGTTTGCAAACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaagccctgaaatgtaggatgcgggttagagagccgcttttgtaacaacaggagatctttatagatgctgcaaaatcaattatcatgttctcc...

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153066|gb|FC330096.1|FC330096
EST:     ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG                         ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: gi|162165174|gb|FC341676.1|FC341676
EST:     ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG                         ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: gi|162170244|gb|FC347364.1|FC347364
EST:     CCGTTTCTTTGTACCTATCTGGAATCGAGANCA-TATCGCTAATGTCCAG                         ATTGTTTTTAAGGAGGACTTTGGGAACTCA
genomic: CCGTTTCTTTGTACCTATCTGGAATCGAGA-CAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGG-AACTCA
EST: gi|162263641|gb|FC440125.1|FC440125
EST:     ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG                         ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: gi|162276852|gb|FC452534.1|FC452534
EST:     ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG                         ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: gi|162149665|gb|FC326716.1|FC326716
EST:     ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG                         ATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAACTCAAGGACGAGGTGGTTATTTTGAT
EST: gi|162162513|gb|FC338607.1|FC338607
EST:     ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAG                         ATTGTTTTTA-GGAGGACTTTGGAAACTCA-GGACGAGGTGGTTATTTTGA
genomic: ACCGTTTCTTTGTACCTATCTGGAATCGAGACAATATCGCTAATGTCCAGgtatgtacaa ... catctcgcagATTGTTTTTAAGGAGGACTTTGGAA-CTCAAGGACGAGGTGGTTATTTTGA