1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGTGGAATTTTGATGGTGGAGACTGTTCTCCAGTATCGCAACTGGTCATTGCAACAATGGAATGCGATGTACACAGATCTGCCTAGTCGACAACTGAAGgtaaaggattcttgatacaagttatgtctattttgagatgttacaagctgtgtggttcattttcatcttcatttagtcgcatccttgatgaggctgcgca...
species | Physcomitrella patens |
transcript | PP1S211_20V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCAACAATGGAATGCGATGTACACAGATCTGCTTAGTCGACAACTGAAG GTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAAEST: gi|162175671|gb|FC351258.1|FC351258
genomic: TGCAACAATGGAATGCGATGTACACAGATCTGCCTAGTCGACAACTGAAGgtaaaggatt ... caatgtgcagGTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAA
EST: TGCAACAATGGAATGCGATGTACACAGATCTGCCTAGTCGACAACTGAAG GTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAAEST: gi|37834007|gb|BJ592019.1|BJ592019
genomic: TGCAACAATGGAATGCGATGTACACAGATCTGCCTAGTCGACAACTGAAGgtaaaggatt ... caatgtgcagGTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAA
EST: ATGTACACAGATCTGCCTAGTCGACAACTGAAG GTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAAEST: gi|37837059|gb|BJ595067.1|BJ595067
genomic: ATGTACACAGATCTGCCTAGTCGACAACTGAAGgtaaaggatt ... caatgtgcagGTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAA
EST: TGCAACAATGGAATGCGATGTACACAGATCTGCCTAGTCGACAACTGAAG GTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAA
genomic: TGCAACAATGGAATGCGATGTACACAGATCTGCCTAGTCGACAACTGAAGgtaaaggatt ... caatgtgcagGTGAAAGTTGCAGATAGGTCCGTAATTCAAACAACAGAGGCTGAAACTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGAATTTTGATGGTGGAGACTGTTCTCCAGTATCGCAACTGGTCATTGCAACAATGGAATGCGATGTACACAGATCTGCCTAGTCGACAACTGAAGgtaaaggattcttgatacaagttatgtctattttgagatgttacaagctgtgtggttcattttcatcttcatttagtcgcatccttgatgaggctgcgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG