1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAGGGGTTGGAAGCACGACTGAAAGAGATCCATGCTTATCTGGAGCTTGTTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttcttatcttacatctataaatttcattcatataatcaagtcagttgcatcttgattgtgaagcatgctttgactgcgaaatatattatgcgggaatgatgttctgatgattcgtctcttatttccgaacag
species | Physcomitrella patens |
transcript | PP1S197_115V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAA GATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCCEST: gi|7693546|gb|AW761652.1|AW761652
genomic: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttctt ... ttccgaacagGATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
EST: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAA GATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCCEST: gi|208368978|gb|DC955063.1|DC955063
genomic: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttctt ... ttccgaacagGATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
EST: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAA GATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCCEST: gi|162212342|gb|FC388070.1|FC388070
genomic: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttctt ... ttccgaacagGATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
EST: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAA GATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCCEST: gi|7648296|gb|AW739279.1|AW739279
genomic: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttctt ... ttccgaacagGATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
EST: TGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTTGTACCATCTACAA GATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCCEST: gi|208371459|gb|DC955795.1|DC955795
genomic: TGTGGAGGGTAAATTGCCTTTGAATCATGAAA-TTTTGTACCATCTACAAgtaagttctt ... ttccgaacagGATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
EST: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAA GATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCCEST: gi|37826136|gb|BJ584148.1|BJ584148
genomic: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttctt ... ttccgaacagGATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
EST: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAA GATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
genomic: TTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttctt ... ttccgaacagGATGTATTCAACCTGCTACCCAACCTCAATGTCCATGAGCTTGTTAAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGGGTTGGAAGCACGACTGAAAGAGATCCATGCTTATCTGGAGCTTGTTGTGGAGGGTAAATTGCCTTTGAATCATGAAATTTTGTACCATCTACAAgtaagttcttatcttacatctataaatttcattcatataatcaagtcagttgcatcttgattgtgaagcatgctttgactgcgaaatatattatgcgggaatgatgttctgatgattcgtctcttatttccgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG