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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGATCAGAGCTCTTTTTGGCGGGAGCGTTAGGGGAATGCTCTCTGGAGGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGGgtaatagttttcactccttggccagctcaagtctcgatcatattttgacataagtgttttatttgaaatatacagcttgtgcgttggttttttgatgcag...

Basic information

species Physcomitrella patens
transcript PP1S186_65V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162270431|gb|FC447547.1|FC447547
EST:     GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGG                         AGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
genomic: GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGGgtaatagttt ... ttttcaacagAGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
EST: gi|100385385|gb|BY950977.1|BY950977
EST:     GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGG                         AGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
genomic: GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGGgtaatagttt ... ttttcaacagAGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
EST: gi|162196325|gb|FC374368.1|FC374368
EST:     GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGG                         AGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
genomic: GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGGgtaatagttt ... ttttcaacagAGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
EST: gi|162273457|gb|FC449906.1|FC449906
EST:     GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGG                         AGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
genomic: GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGGgtaatagttt ... ttttcaacagAGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
EST: gi|162188839|gb|FC364853.1|FC364853
EST:     GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGG                         AGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC
genomic: GGTGCTCCACTATCTCCGGATACTCAGCGTTTCATCAATGTCTGCTTCGGgtaatagttt ... ttttcaacagAGCTCCGATTGGCCAGGGTTATGGCTTGACCGAGACTTGTGCTGGTGCGAC