1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggcaggagcaggtcctttatctcttctggtttctgcaagttttccttgtttatcctggatgcgaccccttctgatcagtgccgttattttcatcttcag
species | Physcomitrella patens |
transcript | PP1S180_67V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|208365735|gb|DC944163.1|DC944163
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|162220966|gb|FC396151.1|FC396151
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|67698972|gb|BJ959205.1|BJ959205
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|18340553|gb|BJ172581.1|BJ172581
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTAGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|208364966|gb|DC947108.1|DC947108
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|162220965|gb|FC396150.1|FC396150
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|37821493|gb|BJ579559.1|BJ579559
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACTEST: gi|18340752|gb|BJ172783.1|BJ172783
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
EST: GATAAAACTGCAGTACCCCAGGTTAGGGAGGATGTCCCACCAATGAAGGG GGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
genomic: GATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggca ... tcatcttcagGGCTTATATTGTGAATTTGGGAGACATGCTTGAAAGATGGAGTAACGGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGCAGGGATAAAACTGCAGTACCCCAGGTTTGGGAGGATGTCCCACCAATGAAGGGgtgcgtggcaggagcaggtcctttatctcttctggtttctgcaagttttccttgtttatcctggatgcgaccccttctgatcagtgccgttattttcatcttcag
- - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - AGGATG