Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGAAAACGGAGGTCCAGCTCCTGAAAGCTTGACCAACAAGATTTATGAAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatacttgtcacgttgtatttttataacagattttttgtagtttttaaaagttaatattttaaagcaggaaacgtttggtatttgacaattggtttctattgtaccag

Basic information

species Physcomitrella patens
transcript PP1S168_70V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386703|gb|BY970244.1|BY970244
EST:     AAAATCCCA-GAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTG
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTG
EST: gi|100417708|gb|BY975615.1|BY975615
EST:     TACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: TACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|162194861|gb|FC370525.1|FC370525
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|162223684|gb|FC399457.1|FC399457
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|100405914|gb|BY991447.1|BY991447
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|162162825|gb|FC338087.1|FC338087
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|162181557|gb|FC358171.1|FC358171
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|100368990|gb|BY984972.1|BY984972
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|162193559|gb|FC370462.1|FC370462
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|208384123|gb|DC911259.1|DC911259
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATTGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
EST: gi|162164264|gb|FC342079.1|FC342079
EST:     AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAAT                         GTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC
genomic: AAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatac ... attgtaccagGTTGATGTGACCCAAATTGGTGTTACCAGCTTTGAGGGACCCAATGGCACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTGAAAACGGAGGTCCAGCTCCTGAAAGCTTGACCAACAAGATTTATGAAAATACCAAGAAGATTACAGCTTATCGAACTGCGGATGGCATCCCAAATgtacttatacttgtcacgttgtatttttataacagattttttgtagtttttaaaagttaatattttaaagcaggaaacgtttggtatttgacaattggtttctattgtaccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG