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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCCTTCACCCTCAGTGCTCATCCCTGCCTTGCGAACAGTCGGAAATATTGTTACTGGCGACGATCTTCAAACACAGgtatccatacaagatctgaaatcattgcttcgctgtttcttttcaacatttctgcatcaaagttgttcatgtgtatgttacggtcgtcacccattatttcactttccatcccgtcatcagtagtgtttacgtgcgtgtttactgtcgcgcag

Basic information

species Physcomitrella patens
transcript PP1S165_51V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S165_51V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 7
CCACCCTTCACCCTCAGTGCTCATCCCTGCCTTGCGAACAGTCGGAAATATTGTTACTGGCGACGATCTTCAAACACAGgtatccatacaagatctgaaatcattgcttcgctgtttcttttcaacatttctgcatcaaagttgttcatgtgtatgttacggtcgtcacccattatttcactttccatcccgtcatcagtagtgtttacgtgcgtgtttactgtcgcgcag
 ||||| || |||||||| ||||| |||||| | || ||||| ||||||||||||||||| || ||| | ||||| |||||| | |||||   ||     ||  | |     | |||| |||  |  ||| | | |   | ||  | || | |  ||    || |  | |||  || |     |                                               
TCACCCATCTCCCTCAGTCCTCATTCCTGCCCTTCGCACAGTTGGAAATATTGTTACTGGGGATGATATCCAAACTCAGgta-ctatacactttcattgttc--tacaaatttatttccttttcaattttattcttgggattttcttatttttgggtcgtagttg--aaccacaatctggtggt-----------------------------------------------