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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGATGATCAATGCTGTAACTCATGTGAAGAGGTGCGAGAAGCATATCGCAAAAAGGGTTGGGCCTTGACCAATACGGATCTAATTGATCAGgtttgtaaaccagtatttcttacaattttgaaatttaatgaagttgaacaagtacttgtgtcaatatgggtagcatcctcagctatagcatacttcctgt...

Basic information

species Physcomitrella patens
transcript PP1S15_354V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S15_354V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os03g20520.1 (Oryza sativa), 5'ss of exon 6
TCAGATGATCAATGCTGTAACTCATGTGAAGAGGTGCGAGAAGCATATCGCAAAAAGGGTTGGGCCTTGACCAATACGGATCTAATTGATCAGgt-ttgtaaaccagtatttcttacaattttgaaatttaatgaagttgaacaag-tacttgtgtcaatatgggtagcatcctcagctatagcatacttcctgt-
||||||||||| ||||||||||| |||||||| || || || || ||||| ||||| || |||||  | |||||||  ||    |||||||||||  |    ||       | || |   ||   | ||  | ||  ||| | ||  |  ||   ||    ||   |   | || ||| | |     |    | | 
TCAGATGATCAGTGCTGTAACTCCTGTGAAGACGTCCGTGATGCCTATCGGAAAAAAGGGTGGGCACTCACCAATATAGAAGAGATTGATCAGgtactacgcacttaaccatttttc---ttcacacttacaagagattgcataatcttgttcaatcttcctgcacatggttcttagcaaaactcgtccatgtatt

upper sequence: PP1S15_354V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA05G24610.1 (Glycine max), 5'ss of exon 6
TCAGATGATCAATGCTGTAACTCATGTGAAGAGGTGCGAGAAGCATATCGCAAAAAGGGTTGGGCCTTGACCAATACGGATCTAATTGATCAGgtttgtaaaccagtatttcttacaat-tttgaaatttaatgaagttgaacaagtacttgtgt-caatatgggtagcatcctcagctata-gcatacttcctgt-
|||||||| || || ||||| || |||||||| ||||| ||||||||| | |||||||| |||||  |||| |||| |||| | |||||||||||| |        || |  ||  | |     | |   | || | ||      | | |    | | | |    |     | | |||| ||  |||  |   | | 
TCAGATGAACACTGTTGTAATTCTTGTGAAGAAGTGCGTGAAGCATATAGGAAAAAGGGCTGGGCAATGACAAATATGGATTTGATTGATCAGgttggc---ttcatactctttgtattacacaataaacactggaattttctgtggattcaaatgccacacttatgaggccgt-agctgtacacattttatttatt