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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGTTTAACAGAGACTTGTGCTGGTGGGACATTCACCGAATGGGATGATCGCTCCGTTCGTCGTGCGGGGCCTCCGACACCTCACTGCTACGTCAAGgtactattcccgcaaacattcattgtttttccttcttgtcgaacaagatggatcgtgaaccgtgttcgttaaatttgtaagggtaattggttgattgtaa...

Basic information

species Physcomitrella patens
transcript PP1S15_17V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S15_17V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA14G23710.1 (Glycine max), 5'ss of exon 7
CTATGGTTTAACAGAGACTTGTGCTGGTGGGACATTCACCGAATGGGATGATCGCTCCGTTCGTCGTGCGGGGCCTCCGACACCTCACTGCTACGTCAAGgtactattcccgcaaacattcattgtttttccttcttgtcgaacaagatggatcgtgaaccgtgttcgttaaatttgtaagggtaattggttgattgtaa--------
 |||||| | ||||||||||||||||||||||||||| | ||    ||||||   || ||| | ||||  || || ||    ||   ||  |   | |||||| |        | |  |      |||| ||||| |  | |     |||  ||||      |||| | |      |  |||| | ||   || | | |         
ATATGGTCTCACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTTGGCCGTGTTGGACCACCTCTTCCGTGCTCATTTATTAAGgtaat-----tatagatctgatcaattttaccttcata-caacttgaatgactcgttttttatgttggcttggg--gggagggaagttatgtggtagcatggtagttt

upper sequence: PP1S15_17V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA13G03280.1 (Glycine max), 5'ss of exon 7
CTATGGTTTAACAGAGACTTGTGCTGGTGGGACATTCACCGAATGGGATGATCGCTCCGTTCGTCGTGCGGGGCCTCCGACACCTCACTGCTACGTCAAGgtactattcccgcaaacattcattgtttttccttcttgtcgaacaagatggatcgtgaaccgtgttcgttaaatttgtaagggtaat-tggttg-attgtaa----
 |||||| | ||||||||||||||||||||||||||| | ||    ||||||   || ||  | ||||  || || ||    ||   ||  |   | |||||| |        | |  |      ||||  |||| |  | |     |||   | |      || | | |      |   | ||||| |||| | || |||     
ATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTTCCATGCTCATTTATTAAGgtaat-----tatagatctgatcaattttatcttcata-caacttgaatgacacattttttatgatggcttggggggagggagtaatatggtagcatggtagtttg

upper sequence: PP1S15_17V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 7
CTATGGTTTAACAGAGACTTGTGCTGGTGGGACATTCACCGAATGGGATGATCGCTCCGTTCGTCGTGCGGGGCCTCCGACACCTCACTGCTACGTCAAGgtactattcccgcaaac---attcattgtttttccttcttg--tcgaacaagatggatcgtgaaccgtgttcgttaaatttgtaagggtaattggttgattgtaa
 |||||| ||||||||||||||||||||||| ||||| | || |  || |||   || ||| | ||||  ||||| ||    ||   ||  ||  | |||||| || |     | |    || ||      | | || |    || |  || ||  |     |    || || ||   |   | ||                   
ATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTTCCGTGCTCATATATTAAGgtagtaattgattagatgtaatccacctccatacattttaacctcaaggaatatttactaacataaatgctccttttttccctcag-------------------