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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGAGTGGCATTGTTGGGAAAGAAGCACAATTGCACACCTGGACAAATTGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAGgttcacctccaaccttgaccttactctagattttaccgcgtagtgactttctttaactatcattaattggctggtacttgttgtaaatgttacgcattaa...

Basic information

species Physcomitrella patens
transcript PP1S158_112V6.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S158_112V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv14s0030g02060.t01 (Vitis vinifera), 5'ss of exon 6
GATCGAGTGGCATTGTTGGGAAAGAAGCACAATTGCACACCTGGACAAATTGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAGgttcacctccaaccttgaccttactctagattttaccgcgtagtgactttctttaactatcattaattggctggtacttgttgtaaatgttacgcattaa-----------
| |  | | |   |||||| | | |||||||  ||||| |||| |||| |||| ||||||||||| || |||||||||||| | || || |||||||| ||| |      ||  |  |   |         |  |  || || | | || |  | |  || ||   || |||| || ||| | ||   |||||  |||             
GCTAAAATAGAGATGTTGGCAGAAAAGCACAGATGCACTCCTGCACAACTTGCCCTTGCTTGGCTTTTTCATCAAGGGGATTATGTGGTGCCTATACCCGgtgcgtaaaaaatttccagtct---------tacatggcataat-atttaccatcatcat-atgtgtttgctgctaattgatttaggagttacagattgggattggtcctt

upper sequence: PP1S158_112V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv14s0030g01990.t01 (Vitis vinifera), 5'ss of exon 6
GATCGAGTGGCATTGTTGGGAAAGAAGCACAATTGCACACCTGGACAAATTGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAGgttcacctccaaccttgaccttactctagattttaccgcgtagtgactttctttaactatcattaattggctggtacttgttgtaaatgttacgcattaa-----------
| |  | | |   |||||| | | |||||||  ||||| |||| |||| |||| ||||||||||| || |||||||||||| | || || |||||||| ||| |      ||  |  |   |    || || | |     || | | || |  | |  || ||   || |||| || ||| | ||   |||||  |||             
GCTAAAATAGAGATGTTGGCAGAAAAGCACAGATGCACTCCTGCACAACTTGCCCTTGCTTGGCTTTTTCATCAAGGGGATTATGTGGTGCCTATACCCGgtgcgtaaaaaatttccagtct----tacatatca-----taat-atttaccatcatcat-atgtgtttgctgctaattgatttaggagttacagattgggattggccctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37832775|gb|BJ590787.1|BJ590787
EST:     TGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAG                         GTACTACTAAGATTCCCAACCTGAAGGAGAACATCGGCAGTGTATTTATCA
genomic: TGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAGgttcacctcc ... agcatttcagGTACTACTAAGATTCCCAACCTGAAGGAGAACATCGGCAGTGTATTTATCA
EST: gi|162259130|gb|FC436424.1|FC436424
EST:     TGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAG                         GTACTACTAAGATTCCCAACCTGAAGGAGAACATCGGCAGTGTATTTATCA
genomic: TGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAGgttcacctcc ... agcatttcagGTACTACTAAGATTCCCAACCTGAAGGAGAACATCGGCAGTGTATTTATCA
EST: gi|37834228|gb|BJ592240.1|BJ592240
EST:     TGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAG                         GTACTACTAAGATTCCCAACCTGAAGGAGAACATCGGCAGTGTATTTATCA
genomic: TGCTCTTGCTTGGCTATTGCATCAAGGGGATGACGTCGTACCTATACCAGgttcacctcc ... agcatttcagGTACTACTAAGATTCCCAACCTGAAGGAGAACATCGGCAGTGTATTTATCA