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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCAGCCAGAGGTTTGAGAGACGAACATTTGCAGACCCTTTTGAGGTTTACAGGGCTCTGCGTATCGTAAATCCTAGTCCATACATGATCTACCTTCAGgtgtgtcaccttcctctgaacgttcttgaaacatagcgcgaattaagtgtagtaaagattactgtagaaaatgtcgatatgattacagctgttgcagttg...

Basic information

species Physcomitrella patens
transcript PP1S154_79V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S154_79V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os03g61120.1 (Oryza sativa), 5'ss of exon 6
CCTCAGCCAGAGGTTTGAGAGACGAACATTTGCAGACCCTTTTGAGGTTTACAGGGCTCTGCGTATCGTAAATCCTAGTCCATACATGATCTACCTTCAGgtgtgtcaccttcctctgaacgttcttgaaa---catagcgcgaattaagtgtagtaaagattactgtagaaaatgtcgatatgattacagctgttgcagttg
| | |||||| | |||||||| || |||||||| ||||| |||||||| ||| | ||  ||||||| || ||||||||||| || |||  ||| || ||||||    |  ||      |    | ||||||   | ||  |  ||||| ||||  |   ||  |   |     || ||  ||| ||       ||  |||   
CTTAAGCCAGCGTTTTGAGAGGCGGACATTTGCTGACCCCTTTGAGGTGTACCGTGCATTGCGTATTGTCAATCCTAGTCCTTATATGGCCTATCTACAGgtgacgaatattttcagtactcctgttgaaatttcttatggtaaattatgtgtcatgctgaacaacatgctttatatcc-tataat----atcgtcacag---

upper sequence: PP1S154_79V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G161337_T02 (Zea mays), 5'ss of exon 5
CCTCAGCCAGAGGTTTGAGAGACGAACATTTGCAGACCCTTTTGAGGTTTACAGGGCTCTGCGTATCGTAAATCCTAGTCCATACATGATCTACCTTCAGgtgtgtcaccttcctctgaacgttcttgaaacatag---cgcgaattaagtgtagtaaagattactgtagaaaatgtcgatatgattacagctgttgcagttg
  | ||||||||||| ||||||||||||| |||  |||| |||||||||||  | ||  | || || || |||||||| |||||||||   ||  | ||||| |   | | |    |  ||  | ||  ||||| |    | | | | | | |     |||||  | ||   ||   |  | ||| |     | | |      
TTTAAGCCAGAGGTTCGAGAGACGAACATATGCCAACCCATTTGAGGTTTATCGAGCATTACGGATTGTGAATCCTAGCCCATACATGGCGTATGTACAGgtatagaagcataaagtacaccctatttgaacattggtatgtgcactgatt-tgcctcagatt-ttataatcaacacc--tttgactgtctatttag------