1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTCAGGCTGCGCAGGCAGCAGCGGCTGCAGGTGGTGGGCCTGCTACTACTGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtttctgggattttttgaaatttctttttctgttatctgctcgtgtagactgcctctaaaattatgtttctgtcagtaacaattccgacagtt...
species | Physcomitrella patens |
transcript | PP1S14_318V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|18336897|gb|BJ168920.1|BJ168920
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: AGACGACCCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|67727809|gb|BJ978068.1|BJ978068
genomic: AGACGA-CCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|162235944|gb|FC411687.1|FC411687
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCANGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGNNCA-CA-GCAGCTGCTGCAGCATCCGCAEST: gi|67728278|gb|BJ978537.1|BJ978537
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATG--CAACAAGCAGCTGCTGCAGCATCCGCA
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCGACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|67726888|gb|BJ977147.1|BJ977147
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|67728007|gb|BJ978266.1|BJ978266
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|7582787|gb|AW698951.1|AW698951
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|37836566|gb|BJ594574.1|BJ594574
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|67725789|gb|BJ976048.1|BJ976048
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|67723947|gb|BJ974206.1|BJ974206
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|37846703|gb|BJ604711.1|BJ604711
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|208373205|gb|DC944904.1|DC944904
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|162235943|gb|FC411686.1|FC411686
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|18340442|gb|BJ172470.1|BJ172470
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCGGCTGCTGCAGCATCCGCAGCACAGGEST: gi|162245025|gb|FC424983.1|FC424983
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|162195398|gb|FC370867.1|FC370867
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|67692593|gb|BJ952826.1|BJ952826
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|67724183|gb|BJ974442.1|BJ974442
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|37849081|gb|BJ607089.1|BJ607089
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|37823060|gb|BJ581126.1|BJ581126
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: AGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|162245026|gb|FC424984.1|FC424984
genomic: AGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGGEST: gi|162270584|gb|FC446509.1|FC446509
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
EST: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATG CTTTGCAGATGTCGATGCAACAAGCAGCTGTTGCAGCATCCGCAGCACAGG
genomic: TGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtt ... tgaaattcagCTCTGCAGATGTCGATGCAACAAGCAGCTGCTGCAGCATCCGCAGCACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCAGGCTGCGCAGGCAGCAGCGGCTGCAGGTGGTGGGCCTGCTACTACTGATACTTCTATGGAAGAATCAGGCGGAGACGACCAAGACCTTGCATATGgttggttgtttctgggattttttgaaatttctttttctgttatctgctcgtgtagactgcctctaaaattatgtttctgtcagtaacaattccgacagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA