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AAAGACTTTATTTAATGAGTTGGAGGTTGTGGAGGGCATGAAGCTTGACAGGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtacttgaattagaatgcctcgtgttgatctactctatatgtgtactgcaaccaatgtttcttgctttccatcaatcactgtttaattttaaatctgcgtgtgtctgttaagcttttttggatttagatgagcctgaacttcattttaacttagcttggcttgtttgacaatgaaacag
species | Physcomitrella patens |
transcript | PP1S149_289V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTTEST: gi|100389190|gb|BY970940.1|BY970940
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
EST: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG GAATTGGAAAATCCCGTCAEST: gi|162159175|gb|FC334346.1|FC334346
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCA
EST: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTTEST: gi|162183372|gb|FC359287.1|FC359287
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
EST: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTG GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTTEST: gi|67576837|gb|BJ949661.1|BJ949661
genomic: GGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
EST: TAATGCAAAGACCCAGAAAGTG GAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
genomic: TAATGCAAAGACCCAGAAAGTGgtgggtactt ... aatgaaacagGAATTGGAAAATCCCGTCATCTTGATCCACGAGAAGAAAATCAACAGTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGACTTTATTTAATGAGTTGGAGGTTGTGGAGGGCATGAAGCTTGACAGGGGATATATTTCCCCCTATTTCATCACTAATGCAAAGACCCAGAAAGTGgtgggtacttgaattagaatgcctcgtgttgatctactctatatgtgtactgcaaccaatgtttcttgctttccatcaatcactgtttaattttaaatctgcgtgtgtctgttaagcttttttggatttagatgagcctgaacttcattttaacttagcttggcttgtttgacaatgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG