1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGCAAAATTGGAGAATGGCGATTTGACAAACGTTCTTTCACTACAGGAGCTCCACCTAAGAACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTGgtaagttcgccacttgttttccttaaacgtgagcagcagttagtactaacaactgcagaattttggtttctaaattgcttacttaacccattaacggtcg...
species | Physcomitrella patens |
transcript | PP1S145_88V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTCCACCTAAGAACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTG GTCACATTGGTCAAAATGGTGAATGAAGCCACCGCAAGCATTCCAGGATGGEST: gi|37829180|gb|BJ587192.1|BJ587192
genomic: CTCCACCTAAGAACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTGgtaagttcgc ... gtgaatgcagGTCACATTGGTCAAAATGGTGAATGAAGCCACCGCAAGCATTCCAGGATGG
EST: CTCCACCTAAGGACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTG GTCACATTGGTCAAAATGGTGAATGAAGCCACCGCAAGCATTCCAGGATGGEST: gi|208388859|gb|DC945435.1|DC945435
genomic: CTCCACCTAAGAACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTGgtaagttcgc ... gtgaatgcagGTCACATTGGTCAAAATGGTGAATGAAGCCACCGCAAGCATTCCAGGATGG
EST: CTCCACCTAAGAACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTG GTCACATTGGTCAAAATGGTGAATGAAGCCACCGCAAGCATTCCAGGATGG
genomic: CTCCACCTAAGAACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTGgtaagttcgc ... gtgaatgcagGTCACATTGGTCAAAATGGTGAATGAAGCCACCGCAAGCATTCCAGGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCAAAATTGGAGAATGGCGATTTGACAAACGTTCTTTCACTACAGGAGCTCCACCTAAGAACCTGACGCTGCCTCCTCCAGGTGTACCAGAGACAGTGgtaagttcgccacttgttttccttaaacgtgagcagcagttagtactaacaactgcagaattttggtttctaaattgcttacttaacccattaacggtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC