1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACCATTTATGCTCAACACTGAGTTCCTTCCATTTACCGAACAGTCGAAGGACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttttcattcacgagttggttttttaaactgatgtttgatattcataaacgctaagagatgcagttaaaaccagagcaagaatgaaacatgatg...
species | Physcomitrella patens |
transcript | PP1S13_192V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAG GGTTCAGCCGTCGGAGCGCAAGNNNNNNNNGTCAGTTCAGATAATGGTGTCEST: gi|37843556|gb|BJ601564.1|BJ601564
genomic: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttt ... gtctgagcagGGTTCAGCCGTCGGAGCGCAAGAAAAAAAAGTCAGTTCAGATAATGGTGTC
EST: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAG GGTTCAGCCGTCGGAGCGCAAGNNNNNNNNGTCAGTTCAGATAATGGTGTCEST: gi|162210183|gb|FC386395.1|FC386395
genomic: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttt ... gtctgagcagGGTTCAGCCGTCGGAGCGCAAGAAAAAAAAGTCAGTTCAGATAATGGTGTC
EST: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAG GGTTCAGCCGTCGGAGCGCAAGNNNNNNNNGTCAGTTCAGATAATGGTGTCEST: gi|18339043|gb|BJ171069.1|BJ171069
genomic: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttt ... gtctgagcagGGTTCAGCCGTCGGAGCGCAAGAAAAAAAAGTCAGTTCAGATAATGGTGTC
EST: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAG GGTTCAGCCGTCGGAGCGCAAGNNNNNNNNGTCAGTTCAGATAATGGTGTCEST: gi|162275690|gb|FC451367.1|FC451367
genomic: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttt ... gtctgagcagGGTTCAGCCGTCGGAGCGCAAGAAAAAAAAGTCAGTTCAGATAATGGTGTC
EST: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAG GGTTCAGCCGTCGGAGCGCAAGNNNNNNNNGTCAGTTCAGATAATGGTGTCEST: gi|37849719|gb|BJ607727.1|BJ607727
genomic: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttt ... gtctgagcagGGTTCAGCCGTCGGAGCGCAAGAAAAAAAAGTCAGTTCAGATAATGGTGTC
EST: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAG GGTTCAGCCGTCGGAGCGCAAGNNNNNNNNGTCAGTTCAGATAATGGTGTC
genomic: ACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttt ... gtctgagcagGGTTCAGCCGTCGGAGCGCAAGAAAAAAAAGTCAGTTCAGATAATGGTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATTTATGCTCAACACTGAGTTCCTTCCATTTACCGAACAGTCGAAGGACAAGAAGGATGCTAAGAAGGACGCTAAAGCAAAGAATCCTCCTGCTAAGgtattttttttcattcacgagttggttttttaaactgatgtttgatattcataaacgctaagagatgcagttaaaaccagagcaagaatgaaacatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA