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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGTGCACTTTTAATTTAGACATCATTGGAGTTAAGAAGAATCCCAACGGACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgtttctaagcttatcctttgtatctttgtctactccttccagcactgcagctccaattgcctctgtttagtcttacctttcagagcagccgg...

Basic information

species Physcomitrella patens
transcript PP1S136_220V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162274756|gb|FC450510.1|FC450510
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208355346|gb|DC949840.1|DC949840
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|67700193|gb|BJ960426.1|BJ960426
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162270739|gb|FC446352.1|FC446352
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|22131959|gb|BQ826908.1|BQ826908
EST:     GCCCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162271254|gb|FC447191.1|FC447191
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|22492259|gb|BU052182.1|BU052182
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208368974|gb|DC955059.1|DC955059
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162241861|gb|FC418116.1|FC418116
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|37836224|gb|BJ594232.1|BJ594232
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|67569695|gb|BJ942519.1|BJ942519
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162212959|gb|FC389175.1|FC389175
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208392237|gb|DC949613.1|DC949613
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208388753|gb|DC953487.1|DC953487
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208379321|gb|DC918979.1|DC918979
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|37841123|gb|BJ599131.1|BJ599131
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|37831990|gb|BJ590002.1|BJ590002
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|37830944|gb|BJ588956.1|BJ588956
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162241862|gb|FC418117.1|FC418117
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTG
EST: gi|162270738|gb|FC446351.1|FC446351
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162271253|gb|FC447190.1|FC447190
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162199734|gb|FC375973.1|FC375973
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208349718|gb|DC917896.1|DC917896
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|37834036|gb|BJ592048.1|BJ592048
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162270927|gb|FC447658.1|FC447658
EST:     TACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: TACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|18339431|gb|BJ171458.1|BJ171458
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162168873|gb|FC345347.1|FC345347
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162184428|gb|FC359174.1|FC359174
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162208303|gb|FC384407.1|FC384407
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|67508386|gb|BJ941253.1|BJ941253
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|37850598|gb|BJ608606.1|BJ608606
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208394661|gb|DC928821.1|DC928821
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162184429|gb|FC359175.1|FC359175
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAANGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162155076|gb|FC330870.1|FC330870
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|67579155|gb|BJ951306.1|BJ951306
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162234658|gb|FC410404.1|FC410404
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAANGGTACCATCATCGAG                         GTGAATGTCAGTGA
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGA
EST: gi|162273378|gb|FC449827.1|FC449827
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208363110|gb|DC954324.1|DC954324
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|67700013|gb|BJ960246.1|BJ960246
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|67692960|gb|BJ953193.1|BJ953193
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162274757|gb|FC450511.1|FC450511
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGG
EST: gi|162155077|gb|FC330871.1|FC330871
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162234657|gb|FC410403.1|FC410403
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|37833488|gb|BJ591500.1|BJ591500
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|67700239|gb|BJ960472.1|BJ960472
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208381956|gb|DC923829.1|DC923829
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|208365968|gb|DC951169.1|DC951169
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
EST: gi|162224753|gb|FC400753.1|FC400753
EST:     GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAG                         GTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG
genomic: GACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 27 (upstream exon), 34 (downstream exon)
Score: 11

TAAGTGCACTTTTAATTTAGACATCATTGGAGTTAAGAAGAATCCCAACGGACCTATGTACACGTCGATGGGAGTAATCACGAAGGGTACCATCATCGAGgtatgttcgt ... atgcatgcagGTGAATGTCAGTGAGTTGGGACTCGTGACACCAGCTGGAAAAGTTGTATGGGGTAAATATGCCCAAGTTACAAATAACCCTGAAAATGATGGTTGCATCA




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