1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGTAACCCCTCTGCTCTTCGGGAAACTGTGGTGGAGGTGCCCAATACTACCTGGGCCGACATTGGAGGCCTGGAGAATGTTAAGCGGGAGCTTCAAGAGgtattttatcagtcacatatttcaactcagttttcactccttacaatgtaacatgtgctagatctggcactgcacagtcgaatggtcgtactctttcgaagcagtttcgattcacggttcgattgtaatggtttggcag
species | Physcomitrella patens |
transcript | PP1S133_13V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGGGCCGACATTGGAGGCCTGGAGAATGTTAAGCGGGAGCTTNCA-GAG ACTGTGCAATATCCAGTGGAGCATCCGGAGAAATTTGAGAAATTTGGAATEST: gi|162259431|gb|FC434942.1|FC434942
genomic: CTGGGCCGACATTGGAGGCCTGGAGAATGTTAAGCGGGAGCTT-CAAGAGgtattttatc ... ggtttggcagACTGTGCAATATCCAGTGGAGCATCCGGAGAAATTTGAGAAATTTGGAAT
EST: CCTGGGCCGACATTGGAGGCCTGGAGAATGTTAAGCGGGAGCTTCAAGAG ACTGTGCAATATCCAGTGGAGCATCCGGAGAAATTTGAGAAATTTGGAATG
genomic: CCTGGGCCGACATTGGAGGCCTGGAGAATGTTAAGCGGGAGCTTCAAGAGgtattttatc ... ggtttggcagACTGTGCAATATCCAGTGGAGCATCCGGAGAAATTTGAGAAATTTGGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTAACCCCTCTGCTCTTCGGGAAACTGTGGTGGAGGTGCCCAATACTACCTGGGCCGACATTGGAGGCCTGGAGAATGTTAAGCGGGAGCTTCAAGAGgtattttatcagtcacatatttcaactcagttttcactccttacaatgtaacatgtgctagatctggcactgcacagtcgaatggtcgtactctttcgaagcagtttcgattcacggttcgattgtaatggtttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT