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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcattccagtgtcgtaattcttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag

Basic information

species Physcomitrella patens
transcript PP1S131_142V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os04g56530.1 (Oryza sativa), 5'ss of exon 7
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcattccagtgtcgtaattcttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag
    || ||||| || |||||||||||||| || |||||||| || ||||| |||||||| ||||| || ||||| || || || |||||||| ||||||||  |       || |  | |||   || |    || |       |  ||  |   || |   || || |     ||   | |  | |||  |   |   ||  ||| | ||                     
CCTTGTCAAACTTGCTGATTTTGGAGTTGCTACTAAATTAACTGAAGCTGATATCAACACACATTCAGTGGTTGGAACTCCATACTGGATGGCCCCTGAGgtttg-------ctaattatcttcacttatgctgtttcaatgaatcaatcgattaggttt---aactccta----attctactagtactatcaacataaaagctaattactact-------------------

upper sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G305321_T01 (Zea mays), 5'ss of exon 4
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagct-ttggttttctctttacggaaggactttcattccagtgtcgtaattcttctatcatca-aatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag
    || ||||| || ||||||||||||||||| ||||| || || ||||||||||||||||||||||| || || || || || |||||||| ||||||||| |   |   || | ||  | |||  | |    || |    | | | |    |   | |   | ||    ||       |  ||||| |   | | |                                    
TCTTGTCAAACTTGCTGATTTTGGAGTTGCCACTAAATTGACTGAAGCTGACATCAACACTCATTCTGTGGTCGGCACTCCATACTGGATGGCGCCTGAGgtcggctattgactaaccatttgttgaatatgatgtttctactgcattcttgccctc-tatgccacttagcatactggagtaggttattatcttaattttt----------------------------------

upper sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G017654_T02 (Zea mays), 5'ss of exon 7
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcat--tccagtgtcgtaattcttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag
    || ||||| || || |||||||||||||| ||||| || || ||||||||||||||||||||||| || || || || || |||||||| ||||||||  |   |    | |   | ||  ||||| |   ||||      ||   ||  |||  | ||  | ||| | ||       | || || ||     ||                                    
CCTTGTCAAACTTGCTGACTTTGGAGTTGCCACTAAATTGACTGAAGCTGACATCAACACTCATTCTGTGGTCGGCACTCCATACTGGATGGCGCCTGAGgttggctattgattaagt-gtttctgttttttgaatacgatgtttctactattgtcctctatcccacttcatatactggagtagtttttttatcttagttt----------------------------------

upper sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA12G03090.1 (Glycine max), 5'ss of exon 7
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcatt----ccagtgtcgtaattc--ttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag
    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| |||||||| |||||||| || ||||| | |     | |||    |||  | |   || ||     || ||||| | |     | ||||   ||||   ||||| || || | | ||   || |||                                      
TCTTGTCAAACTTGCTGATTTTGGTGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgt-attaactgtgtgatgttcttctgctaaatcatttgcttagaacttttaataggttccgtgttcaaattgtgttctaacaccagaatgatataaggagt--------------------------------------

upper sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA11G10810.1 (Glycine max), 5'ss of exon 7
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcattccagtgtcgtaattc---ttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag
    || ||||| || |||||||| ||||| || |||||||| ||||||||  | ||||||||||| |||||||| |||||||| |||||||| || ||||| | |  |  | |||    |||| | |   || ||     || ||||| | |  ||  || |  |||   || | |  | | |  |       ||| ||                                    
TCTTGTCAAACTTGCTGATTTTGGCGTTGCTACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGgt-attaattgtgtgatgttcttttgctaaatcatttgcttagaacttttaat--aggttccttgttcaaattgtgttctaacacctgaatataaagagtttg---------------------------------

upper sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv01s0011g02270.t01 (Vitis vinifera), 5'ss of exon 7
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgt-cagtggtgttctgaacagctttggttttctctttacggaaggact-ttcattccagtgtcgtaattcttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag
    || ||||| || || ||||| ||||| || |||||||| ||||| ||  | || || ||||| |||||||| ||||| ||||||||||| |||||||| || | ||  |         |||   | | | |  |  ||||   | ||| |     | | | ||   ||||      || |||| | || || | |                                    
TCTTGTGAAACTTGCTGACTTTGGTGTTGCAACAAAATTAACTGAGGCAGATGTTAATACGCATTCCGTTGTTGGGACACCATATTGGATGGCCCCTGAGgtacatttgtagtt---gttcttttaaatgtatgtagagtgaagttttgttcttattgatattgaaagagttct--tgctaactttaatttaaaattttgtatta------------------------------

upper sequence: PP1S131_142V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: EFJ14289 (Selaginella moellendorffii), 5'ss of exon 6
AGAGGTAAAACTCGCAGATTTTGGAGTTGCCACCAAATTAACCGAGGCTGACATCAACACTCATTCTGTTGTTGGTACACCTTATTGGATGGCTCCTGAGgtcagtggtgttctgaacagctttggttttctctttacggaaggactttcattccagtgtcgtaattcttctatcatcaaatttattctagaagtgtcccagggaatcattaacggaatagtttatctgacag
|   |||||||| || |||||||||||||||||||||||||| || |||||| | |||||||| || |||||||| || || ||||||||||| || |||||  ||     | ||  |  | ||| |||  ||||    ||| ||   |  |   ||                                                                            
ATTCGTAAAACTTGCGGATTTTGGAGTTGCCACCAAATTAACTGAAGCTGACGTGAACACTCACTCCGTTGTTGGGACTCCGTATTGGATGGCACCAGAGgtgcgtttcactgtgcgcgaccttg-tttaatctt----gaacgatgcttctgttag----------------------------------------------------------------------------