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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCCATGAAGGGACGTGTGACCAAGCTTACTACCCTCAAGGGTAGACAAGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAGgtaagccttcatgactttattcttatctaatgttcaagtaggatgccatagcttaatttactacactacgtttttttcctaaattgtattgatgacacttcagtagatgttaagagcaggtaatgaagcatctagggctgagaacgatttactttgatatcttcag

Basic information

species Physcomitrella patens
transcript PP1S130_248V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162160367|gb|FC337368.1|FC337368
EST:     AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAG                         GTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGTGGATGATTTGG
genomic: AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAGgtaagccttc ... atatcttcagGTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGTGGATGATTTGG
EST: gi|162265642|gb|FC441098.1|FC441098
EST:     AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAG                         GTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGGGGATGATTTGG
genomic: AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAGgtaagccttc ... atatcttcagGTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGTGGATGATTTGG
EST: gi|162169045|gb|FC345727.1|FC345727
EST:     AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAG                         GTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGTGGATGATTTGG
genomic: AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAGgtaagccttc ... atatcttcagGTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGTGGATGATTTGG
EST: gi|162255419|gb|FC431833.1|FC431833
EST:     AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAG                         GTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGTGGATGATTTGG
genomic: AGCCAATGCCCTGTACTGGTCTCCACTTGGACGCTTCATCATTCTTGCAGgtaagccttc ... atatcttcagGTCTCAAGGCTTACAACGGTCAGCTTGAGTTTTACAATGTGGATGATTTGG