1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGCGCTTTTTTAAAATATGAAACTAAGGAACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctttctctatctttgattctaaggatagagtacgtctgttttacggctttcaacattcattgttgttcttggttagtcttctaggtaggaagtactgcgttctaaagggttgtgaaatgcgttcttggaacaaataagtgccgcagtggttcatactgagcactgacgacttatgttttgtag
species | Physcomitrella patens |
transcript | PP1S12_239V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGEST: gi|18373005|gb|BJ204607.1|BJ204607
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCG
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGGTTAAGTGGGCCGACACTGAGAAAGAAAGEST: gi|18361647|gb|BJ193713.1|BJ193713
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGG-TTAAGTGGGCCGACACTGAGAAAGAAAG
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGGEST: gi|162270407|gb|FC447107.1|FC447107
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
EST: CACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGGEST: gi|208353532|gb|DC938725.1|DC938725
genomic: CACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
EST: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAG GGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
genomic: AACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctt ... tgttttgtagGGCTCACCATCTGCGTTGGTGGTTAAGTGGGCCGACACTGAGAAAGAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCGCTTTTTTAAAATATGAAACTAAGGAACAAGCTATTGCTGCTATTGAAGCTCTTAATGGAGTCCACAGAATGGAGgtatatgctttctctatctttgattctaaggatagagtacgtctgttttacggctttcaacattcattgttgttcttggttagtcttctaggtaggaagtactgcgttctaaagggttgtgaaatgcgttcttggaacaaataagtgccgcagtggttcatactgagcactgacgacttatgttttgtag
- - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGC