1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCATATTGGAATTACTGTTGATGACGTCTACAAAGCATGCGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggctctattttcagttggcactgccttcttttgaagatttatgactggattttctaaaataattagaaccgttgaatatgtagatttctcagca...
species | Physcomitrella patens |
transcript | PP1S120_79V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|15327367|gb|BI487991.1|BI487991
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|37821833|gb|BJ579899.1|BJ579899
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|67694462|gb|BJ954695.1|BJ954695
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|15729599|gb|BI741396.1|BI741396
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|7583583|gb|AW699492.1|AW699492
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|67574192|gb|BJ947016.1|BJ947016
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|162210552|gb|FC386848.1|FC386848
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|67569549|gb|BJ942373.1|BJ942373
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|162221907|gb|FC398175.1|FC398175
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|7582951|gb|AW699115.1|AW699115
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|162227422|gb|FC403156.1|FC403156
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|162266890|gb|FC443004.1|FC443004
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|7583223|gb|AW699387.1|AW699387
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|15261229|gb|BI436539.1|BI436539
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|67691738|gb|BJ951971.1|BJ951971
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTGEST: gi|67697592|gb|BJ957825.1|BJ957825
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
EST: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACG GAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
genomic: CGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggct ... agaattacagGAAGGATGAAGGGACTTGCATTTATCAAGGACCCTGATGGTTACTGGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATATTGGAATTACTGTTGATGACGTCTACAAAGCATGCGAACGTTTTGAGAAGCTAGGAGTTGAATTCGTGAAGCGCCCAGATGACGgtaagcggctctattttcagttggcactgccttcttttgaagatttatgactggattttctaaaataattagaaccgttgaatatgtagatttctcagca
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG