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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGAGTACGGTGCTTTCAAAGAGCCTGTCGTACGCAACTACACTCGTCAGATCCTTTCTGGGTTAGCATACCTGCATAATCAAAATACTGTGCATAGgtacgtttttactaatccatcttctgaagctttgaattttggatggcttctgttgcttataccagtaattattgtatgagcttaaattatttggtttttgtacagtttccactgatcaaagttgatattgtttttttcag

Basic information

species Physcomitrella patens
transcript PP1S10_200V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162169368|gb|FC346258.1|FC346258
EST:     CAGATCCTTTCTGGGTTAGCATACCTGCATAATCAAAATACTGTGCATAG                         AGATATTAAAGGAGCGAACATTCTTGTAGACACTAACGGAATGGTGAAACT
genomic: CAGATCCTTTCTGGGTTAGCATACCTGCATAATCAAAATACTGTGCATAGgtacgttttt ... tttttttcagAGATATTAAAGGAGCGAACATTCTTGTAGACACTAACGGAATGGTGAAACT
EST: gi|162166784|gb|FC342961.1|FC342961
EST:     CAGATCCTTTCTGGGTTAGCATACCTGCATAATCAAAATACTGTGCATAG                         AGATATTAAAGGAGCGAACATTCTTGTAGACACTAACGGAATGGTGAAACT
genomic: CAGATCCTTTCTGGGTTAGCATACCTGCATAATCAAAATACTGTGCATAGgtacgttttt ... tttttttcagAGATATTAAAGGAGCGAACATTCTTGTAGACACTAACGGAATGGTGAAACT