1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAGTGGTAGAGGAGGTCACCGATGATAAAAAAGTGATCAAGAAAATTTTGACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccctaaccctgttgtcaagagcaatttccacaaataataaaaaaattaacgaaatgaaagaaatttttgtgtgctcctttgttgaacgtttcgggttgtatgcag
species | Physcomitrella patens |
transcript | PP1S109_70V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGCCCAATGATGGATCGACTGTTAAAG TACGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCEST: gi|162160213|gb|FC337110.1|FC337110
genomic: GAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccc ... ttgtatgcagTGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTC
EST: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAG TACGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCEST: gi|67570302|gb|BJ943126.1|BJ943126
genomic: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccc ... ttgtatgcagTGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTC
EST: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAG TGCGGTACGTGGCCNAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCEST: gi|162199328|gb|FC373708.1|FC373708
genomic: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccc ... ttgtatgcagTGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTC
EST: ATCGACTGTTAAAG TACGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCEST: gi|162253928|gb|FC430601.1|FC430601
genomic: ATCGACTGTTAAAGgtacactccc ... ttgtatgcagTGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTC
EST: CGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAG TACGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCEST: gi|100435874|gb|BY979267.1|BY979267
genomic: CGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccc ... ttgtatgcagTGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTC
EST: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAG TGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTCEST: gi|162193217|gb|FC371524.1|FC371524
genomic: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccc ... ttgtatgcagTGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTGAGAAGAACGGTC
EST: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAG TACGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTG
genomic: GACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccc ... ttgtatgcagTGCGGTACGTGGCCAAGTTGGAGAATGGAACGATCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTGGTAGAGGAGGTCACCGATGATAAAAAAGTGATCAAGAAAATTTTGACGGCAGGCGAAGGCTATGAGAAGCCCAATGATGGATCGACTGTTAAAGgtacactccctaaccctgttgtcaagagcaatttccacaaataataaaaaaattaacgaaatgaaagaaatttttgtgtgctcctttgttgaacgtttcgggttgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA