1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCGAAGATGAAGAAGGGAGCTTATCTGGTGAACAACGCGCGAGGAGCCATTGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgacaacttccgaaaacttccgctcatcccctgcatgtcgctaacctagaatcctaggcttgcttaccaggaacatgaacaccaatcacgaatggctctggttgctggatcgatcgctaagccgtggtaaccgaaattggcag
species | Physcomitrella patens |
transcript | PP1S106_16V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTEST: gi|162269932|gb|FC445423.1|FC445423
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTEST: gi|18335876|gb|BJ167897.1|BJ167897
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTEST: gi|18341708|gb|BJ173743.1|BJ173743
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTEST: gi|208345467|gb|DC917350.1|DC917350
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTEST: gi|208386186|gb|DC949097.1|DC949097
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
EST: TGCAGATACGGAGGTAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTEST: gi|67697753|gb|BJ957986.1|BJ957986
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTEST: gi|162262253|gb|FC437164.1|FC437164
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAEST: gi|162272578|gb|FC448542.1|FC448542
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCA
EST: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAG GATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
genomic: TGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgac ... aaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAAGATGAAGAAGGGAGCTTATCTGGTGAACAACGCGCGAGGAGCCATTGCAGATACGGAGGCAGTGAAAGAAGCATGCGAGTCAGGACACCTCGGAGgtaactcgacaacttccgaaaacttccgctcatcccctgcatgtcgctaacctagaatcctaggcttgcttaccaggaacatgaacaccaatcacgaatggctctggttgctggatcgatcgctaagccgtggtaaccgaaattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC