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GTCGAGTATCAGACAGCCTCTGGACAGATGTTGGACCTGATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatcttatttttgactggatgttgaaccactagtattacgtgtttttgttatacatttatttgtataataatttgttacagtttagctttttccttgatgccttaagatgacgtcattgttcagtgaatatacgtgttgacaagacattgcactttgtggattgcag
species | Physcomitrella patens |
transcript | PP1S101_225V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCCEST: gi|162152920|gb|FC329222.1|FC329222
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTANAATACAAAACTGCATATTATTCATTTTATCTTCCEST: gi|100387744|gb|BY951744.1|BY951744
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC
EST: TCACCACTCCAGCAGGAGAAAGT-GATTTGTCGAANTATGTATAACCCAC TTATCTGCGAATCGTAAAATACAAAACTGCATATAAT-CATTTTATCEST: gi|100401204|gb|BY990883.1|BY990883
genomic: TCACCACTCCAGCAGGAGAA-GTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATC
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTANAATACAAAACTGCATATAATTCATTTTATCTTCCEST: gi|100361028|gb|BY946877.1|BY946877
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC
EST: TCACCACTCCAGCAGGAGAAGTTTGATTTGT-GAAATATGTATTACCCAC TTATCTGCGAATCGTAAAATACAAAACTGCATATAATTCATTTTATCTCCCEST: gi|162230234|gb|FC406590.1|FC406590
genomic: TCACCACTCCAGCAGGAGAAGTT-GATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTANAATACAAAACTGCATATTATTCATTTTATCTTCCEST: gi|100383945|gb|BY987202.1|BY987202
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTAAAATACAAAAACTGCATATTATTCATTTTATCTTCEST: gi|100402689|gb|BY954960.1|BY954960
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAA-CTGCATATTATTCATTTTATCTTC
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTAAAATACAAAACTGCATATAATTCATTTTATCT-CCEST: gi|208345511|gb|DC909201.1|DC909201
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCCEST: gi|100396655|gb|BY990233.1|BY990233
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC
EST: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCAC TTATCTGCGAATCGTAAAATANCAAA-CTGCATATNATTCATTTTTATCT-
genomic: ATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatct ... tggattgcagTTATCTGCGAATCGTAAAATA-CAAAACTGCATATTATTCATTTT-ATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGAGTATCAGACAGCCTCTGGACAGATGTTGGACCTGATCACCACTCCAGCAGGAGAAGTTGATTTGTCGAAATATGTATTACCCACgtacgtatcttatttttgactggatgttgaaccactagtattacgtgtttttgttatacatttatttgtataataatttgttacagtttagctttttccttgatgccttaagatgacgtcattgttcagtgaatatacgtgttgacaagacattgcactttgtggattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT