Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTACCATGGGGACACTTCCAAGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatcattacgacgggtggtcggtctcattataagttctctttgtatctttattcggtccctgatttttaatatgcatcagctagagaattcttg...

Basic information

species Physcomitrella patens
transcript PP1S90_139V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37837780|gb|BJ595788.1|BJ595788
EST:     AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: gi|162163706|gb|FC339785.1|FC339785
EST:     AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: gi|162209803|gb|FC385737.1|FC385737
EST:     AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: gi|67698886|gb|BJ959119.1|BJ959119
EST:     AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: gi|100378011|gb|BY949635.1|BY949635
EST:     GACCTTTTANTTGTG-TAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGAT
genomic: GACCTTTTA-TTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGAT
EST: gi|100361031|gb|BY946879.1|BY946879
EST:     AGACCTTTTATTGTG-TAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATC
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATC
EST: gi|37828378|gb|BJ586390.1|BJ586390
EST:     AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: gi|208381832|gb|DC923761.1|DC923761
EST:     AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
EST: gi|37848383|gb|BJ606391.1|BJ606391
EST:     AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAG                         GTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT
genomic: AGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatc ... acatggtcagGTCACGAAGGAATCTCTTGATAAAGCAATTTCGATTTGCGGGCCAGGTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTACCATGGGGACACTTCCAAGACCTTTTATTGTGGTAACGTCAGTGATGAAGCTAAAAAGCTAGTTGAGgtaggccatcattacgacgggtggtcggtctcattataagttctctttgtatctttattcggtccctgatttttaatatgcatcagctagagaattcttg

- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC